cluster # 5816

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5816 cluster # 5816 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5816#0 length = 952 sequences # 3

consensus_5816#1 length = 364 sequences # 1

consensusID : consensus_5816#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 952
fasta sequence

                              [CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGACGTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAAACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGACGAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGCCCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCCATCATTGTGCACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACT-GGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGGATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG]

[+] EMBL BM626371             [CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGACGTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAAACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGACGAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGCCCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCCATCATTGTGCACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCTACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACTGGGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAAGGAACGATGCTCGAT                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM611467             [                                                                                                                                                                                                                                                                                                                                                                  ccgACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACT GGCTCACCAACTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGGATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG]
[+] EMBL BX623433             [                                                                                                                                                                                                                                                                                                                                                                                          GTACNGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTACGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGCGGCGTCAAAAACGACCCCCACCACT GGCTCACCAAGTAATGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCCACCGTTTCACCGTCCAATGGACACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGGCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAATTTATTTCATCTTCGCATATCTCTGTG TTTTTTCCGCCCGACCTCAACCTCGGAAGGGATTGCCCGGTAGTGGTTTG                                  ]




>consensus_5816#0
CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGAC
GTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAA
ACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGAC
GAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGC
CCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCC
ATCATTGTGCACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACACG
GCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATG
CGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGT
ATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCT
CCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACTGGCTCACCAACTAAT
GCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATACG
CCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGCC
ACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAGG
CTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTAA
TTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGGA
TTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG

consensusID : consensus_5816#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [AATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCACACTGGCTCACCAAGTAATGCCGTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCG]

[+] EMBL BX466562             [AATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACACGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGATGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTGTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTCTCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCACACTGGCTCACCAAGTAATGCCGTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACGCCCG]




>consensus_5816#1
AATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACA
CGGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGA
TGCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGT
GTATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATT
CTCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCACACTGGCTCACCAAGTAA
TGCCGTGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATACG
CCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5816#0      CCGACGAAGGAGACGCGCACGATCCAGCACATGCAGTATCTGGCCTGGCCGGACCATGAC 60
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      GTGCCGGCCGACCCGAACCTGTTCCTGCAGTTCACCGAGCGGGTGCGGTCGGCGCGTGAA 120
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      ACCACGCTGCCGCTCGAGATCGAGGCCAGCCTGAAGAACGTGAAGCTGCGCAGCGTGGAC 180
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      GAGAATGGTGGGCTGGACAACTCGGAGCGCCGAATCGTGCATACGGACAGTGACGACAGC 240
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      CCGAACGATATGCCGTCCTCCACGTCGGTGCATCAGTATATTAGTGCTTCTAATCCGCCC 300
consensus_5816#1      -----------------------------------------------------------A 1
                                                                                  

consensus_5816#0      ATCATTGTGC-ACTGTTCGGCCGGAATTGGTCGGACCGGTGTGCTGATACTGATGGACAC 359
consensus_5816#1      ATCACGAGGTTACTGTTCGGCCGGTATCGGGCGGACGGGTGTGCTGATACTGATGGACAC 61
                      ****    *  ************* ** ** ***** ***********************

consensus_5816#0      GGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGAT 419
consensus_5816#1      GGCACTGGCACTGATGGAGGTACGGGAACCGATCTATCCGCTGGACATTGTGCGAGCGAT 121
                      ************************************************************

consensus_5816#0      GCGCGATCAGCGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTG 479
consensus_5816#1      GCGCGATCAACGACCCTGCATGGTGCAGAATGTGAGCCAGTATCGCTTCGTGTGTGAGTG 181
                      ********* **************************************************

consensus_5816#0      TATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTC 539
consensus_5816#1      TATCTGTGCGGCGTACATGCAGCAGGCAGCCAAGGAGCAGGAAGCGTCTGTCCCAAATTC 241
                      ************************************************************

consensus_5816#0      TCCCACGGAAACGCGCAAAGCGGCTTCAAAAACGACCCCCACCACTGGCTCACCAACTAA 599
consensus_5816#1      TCCCACGGAAACGCGCAAAGNGGCGTCAAAAACGACCCCCAC-ACTGGCTCACCAAGTAA 300
                      ******************** *** ***************** ************* ***

consensus_5816#0      TGCCGCTGCACCAAAGCCCGTGCCGAGCATAGCGTCGCCGGAGGAAACGATGCTCGATAC 659
consensus_5816#1      TGCCG-TGCACCAAAGCCCGTGCCGAGCATAGCATCGCCGGAGGAAACGATGCTCGATAC 359
                      ***** *************************** **************************

consensus_5816#0      GCCCGCCGACAGCGAACGCAAGGCACCGCTGGCAACGGAAACGACTAGCATCAGTACGGC 719
consensus_5816#1      GCCCG------------------------------------------------------- 364
                      *****                                                       

consensus_5816#0      CACCGTTTCACCGTCCAATGGGCACGAGACGGTCGCTTAGAGAAGCCCACAGCCCTGCAG 779
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      GCTGAAGCTTGGCCTTGAGTGGTTGGCAACCGTTGGAACAGGAAAAACAAAACGGTATTA 839
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      ATTTATTTCATCTTCGCATATCTCTGTGTTTTTTTCCGCCCGACCTCAGCCTCGGAAGGG 899
consensus_5816#1      ------------------------------------------------------------
                                                                                  

consensus_5816#0      ATTGCCCGGTAGTGGTTTGGTAAAAACACAAGTACGTTTAGACTCGTAGTGTG 952
consensus_5816#1      -----------------------------------------------------