These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 486 fasta sequence [CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCATGCAGCT] [+] EMBL BM611624 [CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTA ] [+] EMBL BM647925 [ ccgCGTTCAGCTCGCAACATG AAAACTGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTTTACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGGATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCATGCAGCT] [+] EMBL BM653550 [ ccgGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTATGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTACATTCATGCATGC ] consensusID : consensus_5817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [CCGCTCAACGAATACATCGTTCAGCTCGCAACATGAAAACGGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTTTACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGGTTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTGCGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTTGC] [+] EMBL BM642898 [CCGCTCAACGAATACATCGTTCAGCTCGCAACATGAAAACGGTCATAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAGAGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCAAAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACACGTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTTTACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGGTTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTGCGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5817#0 CCGCCCACGCGTCCGCCCGCAAAGAATACATCGTTCAGCTCGCAACATGAAAAACTGTCA 60 consensus_5817#1 ------------CCGCTC--AACGAATACATCGTTCAGCTCGCAACATGAAAA-CGGTCA 45 **** * ** ****************************** * **** consensus_5817#0 TAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAG 120 consensus_5817#1 TAGTACTGTTCGCCCTAGTGGCTGTTGCCACAGCAATGCAGCCATTTTATCACCCACAAG 105 ************************************************************ consensus_5817#0 AGCAATTTCCCATGGTTGAAATCATGCCCATAAATACTTTAGATAACAGACAGTTACCCA 180 consensus_5817#1 AGCAATTTCCCATGGTTGAAATCATGCCCATAAATACATTAGATAACAGACAGTTACCCA 165 ************************************* ********************** consensus_5817#0 AAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACAC 240 consensus_5817#1 AAATTTTGGAATCTCTTGTAGGGCTTGTTGACGGGTTTCTTAATGTTTTCGAAGCAACAC 225 ************************************************************ consensus_5817#0 GTCGTGGCGACCCTGTTGATCGTGAGAACATGCGTCAGCTTAGCTTTTTGCTCACACTTT 300 consensus_5817#1 GTCGTGGCGACCCTGTTGATCGTGAGAACATGCGGCAGCTTTTACAATTGTTACAGCTTT 285 ********************************** ****** *** * **** consensus_5817#0 TACCTTCCATCGTAGATACTGTCTATAGAATATTTGGTCAACCAACATAATTTGAAAAGG 360 consensus_5817#1 TACCTCCATTTGCAAAGACTCTCAATGAACAATTTGGTCAATGAACATAATTCGAAAAGG 345 ***** * * * * * *** ** ** * ********** ********* ******* consensus_5817#0 ATTTTCAACCCACAAGTGAGGTGAGACTTTAACTGGAAGACCTCAAAGAAATGAGAGCTA 420 consensus_5817#1 -TTTTCAACCCACAAGTGAGGTAAGATTTGCACTGGAAGACTTCACACAAAAGAGAGCTG 404 ********************* *** ** ********** *** * *** ******* consensus_5817#0 TGATGGAAATGGACGACCTTAAATTTCACTATTGGCATAAATAAATCTATATTCATGCAT 480 consensus_5817#1 CGATGGGAATGGACGATCATAAATTTCTCTATCGGCATAAATAAATATATATTCGTACTT 464 ***** ********* * ******** **** ************* ******* * * * consensus_5817#0 GCAGCT 486 consensus_5817#1 GC---- 466 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||