cluster # 5818

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Anopheles gambiae
cluster # 5818 cluster # 5818 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5818#0 length = 1321 sequences # 3

consensus_5818#1 length = 398 sequences # 1

consensusID : consensus_5818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1321
fasta sequence

                              [GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTGGAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGTGCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATTTCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCATAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGCGGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAGCCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCTCGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGTACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCAGGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAACTCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTTGTTGGTACATTCCAGCCACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGACAAATTTTCATCATTTTGGAGGACCGG]

[+] EMBL CNS094E0             [GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTGGAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGTGCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATTTCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCATAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGCGGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAGCCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCTCGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGTACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCAGGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CNS094DZ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAACTCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTTGTTGGTACATTCCAGCCAC                                                                                                                                                                  ]
[-] EMBL BM611813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATAGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTCCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGACAAATTTTCATCATTTTGGAGGACCGG]




>consensus_5818#0
GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTG
GAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGT
GCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATT
TCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCA
TAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGC
GGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAG
CCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCT
CGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGT
ACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCA
GGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACA
GCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTA
TTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAAC
TCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATC
CTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATC
GTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTG
GTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGT
CGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGA
TAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTC
ACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTT
GTTGGTACATTCCAGCCACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCCTTATGCC
ACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTAT
AAGATATTCTTCGTCCTCGAGCAGACAAAAACGACAAATTTTCATCATTTTGGAGGACCG
G

consensusID : consensus_5818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGCAAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTAGCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGACAAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG]

[-] EMBL BM654434             [TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGCAAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTAGCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGACAAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG]




>consensus_5818#1
TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGA
AACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTG
GTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGCAAAG
GAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTAGCAC
GCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTC
GGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGACAAAT
TTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5818#0      GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTG 60
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGT 120
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATT 180
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      TCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCA 240
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      TAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGC 300
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAG 360
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      CCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCT 420
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      CGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGT 480
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      ACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCA 540
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACA 600
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTA 660
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      TTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAAC 720
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      TCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATC 780
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      CTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATC 840
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTG 900
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      GTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGT 960
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      CGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGA 1020
consensus_5818#1      ------------------------------------------------------------
                                                                                  

consensus_5818#0      TAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTC 1080
consensus_5818#1      ----TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTC 56
                          ********************************************************

consensus_5818#0      ACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTT 1140
consensus_5818#1      ACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTT 116
                      *********** ********************************************* **

consensus_5818#0      GTTGGTACATTCCAGCCACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATC-------- 1192
consensus_5818#1      GTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGC 176
                      *************** ************************************        

consensus_5818#0      ------------------------------------------------------------
consensus_5818#1      AAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTA 236
                                                                                  

consensus_5818#0      -----------------CTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCA 1235
consensus_5818#1      GCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCA 296
                                       *******************************************

consensus_5818#0      GCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGAC 1295
consensus_5818#1      GCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGAC 356
                      *******************************************************  ***

consensus_5818#0      AAATTTTCATCATTTTGGAGGAC--CGG-------------- 1321
consensus_5818#1      AAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG 398
                      ***********************  ***