These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1321 fasta sequence [GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTGGAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGTGCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATTTCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCATAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGCGGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAGCCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCTCGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGTACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCAGGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAACTCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTTGTTGGTACATTCCAGCCACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGACAAATTTTCATCATTTTGGAGGACCGG] [+] EMBL CNS094E0 [GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTGGAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGTGCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATTTCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCATAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGCGGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAGCCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCTCGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGTACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCAGGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGC ] [-] EMBL CNS094DZ [ GTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACAGCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTATTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAACTCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTTGTTGGTACATTCCAGCCAC ] [-] EMBL BM611813 [ TAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATCCTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATCGTTCGCGATCGCTTCGATGATAGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTGGTCCGGTCCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGTCGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGATAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGACAAATTTTCATCATTTTGGAGGACCGG] consensusID : consensus_5818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGCAAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTAGCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGACAAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG] [-] EMBL BM654434 [TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTCACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTTGTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGCAAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTAGCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCAGCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGACAAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5818#0 GTGTTCGGTTTTATCTGATATTTAATTTTCCAGTCATTTAAGCTTAATCTGTGGCGCTTG 60 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GAGCATTTGAGTTCTAATGTATTTTCACACGCTGCAACTCTCGTGCATCCAGGAACTCGT 120 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GCATCGGGCAGTTCCGAAAAATGGTCTGTATATAGGCTAACGCAACCTTTGGTTACAATT 180 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 TCAAAGAAATCACTCCTATCGATTGCTACCACAACAAGGCCAATAAACTGAAAGTCTCCA 240 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 TAGAAATAAAAATAAAACCAGTTTGTACTTATTCGGTGTCGCTTGTCTCATCTGCAATGC 300 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GGGATCTGTTGCGTGTCCTTCGCACTTTGCGTTCTGTACCGGTGTTTCTGGGTTTCTTAG 360 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 CCGCATTATGAAGTCGATTAAAATGATCCCTCAGATAGACGGCATTGGGGAACGTTTTCT 420 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 CGCAGTCCGGGCATTCGAACTTTTCCCCTTTGCTCTCGTGAGTAAGCATATGGTACCGGT 480 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 ACGTTTTGTGATGAATGAAACCTTTGCCGCATATTTTGCACTTCTTTTTAACCAGTTTCA 540 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GGTGCACCTGTTCGATGTGCTGTGCCATGGTCGCCTTATGTTTCGTCTTTACCGGGCACA 600 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GCGAACACTCGAACGAGGGCTCGCGGTGTTTCTCATAGTGGGACGGCATGTGGAACACTA 660 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 TTACGCCACAGATTTCGCACAGATGCTTCTTTCGCTTGCCGCGTCGCGCACGTACTGAAC 720 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 TCGGGGCGGTATGGGATTTAGGCTGTTATTCCAGTCGACGAACGATCTGTGAATCACATC 780 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 CTCAACGTGCACCGTTTCACCCTGCTCGATGTAGTTGGCCGAGTACGCGAACGCTTCATC 840 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GTTCGCGATCGCTTCGATGATGGCGCTCGTGACCGGTAGCACCGGTTCGCTCTGCTTGTG 900 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 GTCCGGTTCAGGCAACAGCTCCGTGATGTTGCTACGACTGCACACTGGCTCGCTGGGTGT 960 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 CGACTGTAAGCAGTGGTCACCAAATCCATCGAAATCGAACGTAACCTCCGAGCTGTCTGA 1020 consensus_5818#1 ------------------------------------------------------------ consensus_5818#0 TAGTTCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTC 1080 consensus_5818#1 ----TCGACCACAGTTTCGGTTGGCTCGCTAGCACTCGCCTCCACCATGGCACGTAGCTC 56 ******************************************************** consensus_5818#0 ACGAAACTGTGCGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGTTT 1140 consensus_5818#1 ACGAAACTGTGTGTCGTTGCTCATGCACGTTTTCCGGAAGGTGGAACAAATTTGCAGCTT 116 *********** ********************************************* ** consensus_5818#0 GTTGGTACATTCCAGCCACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATC-------- 1192 consensus_5818#1 GTTGGTACATTCCAGACACATGGCGTAGGCCGTTTTGTTGTCATCGTCGATCTGTTTTGC 176 *************** ************************************ consensus_5818#0 ------------------------------------------------------------ consensus_5818#1 AAAGGAAAGTCAGGTGAAGGTACGATCTACTCGTGCGCGTTAGCGTGGGACACTCGACTA 236 consensus_5818#0 -----------------CTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCA 1235 consensus_5818#1 GCACGCTATTACTCACCCTTATGCCACTAAACAGTGCCACTTCCTCGATATCGATCGCCA 296 ******************************************* consensus_5818#0 GCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAACGAC 1295 consensus_5818#1 GCTCGGAGGCATCCGCGACCGGTATAAGATATTCTTCGTCCTCGAGCAGACAAAAGGGAC 356 ******************************************************* *** consensus_5818#0 AAATTTTCATCATTTTGGAGGAC--CGG-------------- 1321 consensus_5818#1 AAATTTTCATCATTTTGGAGGACACCGGTACATCCGGACGCG 398 *********************** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||