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Anopheles gambiae
cluster # 5825 cluster # 5825       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5825#0 length = 1132 sequences # 3  
consensus_5825#1 length = 421 sequences # 1  

consensusID : consensus_5825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1132
fasta sequence
                              [AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG----AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTACCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG]

[+] EMBL CNS09KLK             [AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAG GTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG    AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATT                                                                                                                                            ]
[-] EMBL CNS09KLL             [                                                                             TGTGTGTTTTTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTCTACAGCCCCTGATCGCGTGTGAGTGAAAAAAATCGGTTCGGTTCGGTGTGGACGGGTTTCAGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCACCAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATTCGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTGTGATTACAAACTGACGCAAGGTGACGCGTTTTTTGGCCGTGCGGGACGTGCGTTTTTGTTTTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTG    AAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTA                                                                                    ]
[+] EMBL BM613412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgGATCAGGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGCCTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTG TTTTTTCGTACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCC TTTTTTAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATCAGTGTGCAATGTGAAGTGTGTTCCGAAATTGGTATATTGTGAAAAAAAAAACACAGTAAAATAAACGAAGAGTGGCATGTGCTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCATCACACCTATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGTGTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATCGATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTACCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG]


>consensus_5825#0 AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTT TTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTT GAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTC TACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTC AGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCAC CAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATT CGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTG TGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTT TTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGC CTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCG TACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGT TGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAG TGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGT GTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGT GTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCA TCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGT GTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATC GATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTA CCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG



consensusID : consensus_5825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence
                              [CGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCATCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT]

[+] EMBL CNS09G4M             [CGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCATCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT]


>consensus_5825#1 CGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTTTTCTCCCCTGTTTTG TTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGC GAGACATAGAAAGCAGTTGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAAT AAGTGTGCAATGTGAAGTGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATA AACGCAGAGTGGCATGTGTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCG CAAAACGATCAACGCGTGTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTC TAGCGAGAACCCATCCATCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTC T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5825#0      AAAGCTCAGCCCAGGCGGACGCGTTTCGGGGTCCGTGTGCGTGTATATATTCCCTACGTT 60
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      TTCTCCCCTGTTTTGTTTGTGTGTTTGTTTCGCAATTGTGTTGCCTGTGCCTGTGTGTTT 120
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      GAATCCTGCTCCAGCGAGACATAGAAAGGTGCGGATAGAGAAGGGAAGGAGCTGATCCTC 180
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      TACAGCCCCTGATCGCGTGTGAGTGAAAAAGATCGGTTCGGTTCGGTGTGGACGGGTTTC 240
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      AGATGGGGCCCGAGAGCCACCACACACTATTGTAGTTCTACCGGAAACGGTGAAGCGCAC 300
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      CAGCAGCAGAAGAACATGGCGTCCAGCATCAGCGATCGGCAACCGGTGTGTGATGCGATT 360
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      CGGCCCTTGGTGTGTGAGTTGCATTATTATTTTACGGTGGCTATGCCGTGTCGCGGGCTG 420
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      TGATTACACACTGACGCAAGGTGACGCGTTTGTTGGCCGTGCGGGACGTGCGTTTTTGTT 480
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      TTGTTTCATTTGCGTACGCGATCAAGCACCTTCAGCTCAAGCGTGACGGAGAAATTGTGC 540
consensus_5825#1      -----------------------------------CGGACGCGTTTCGGGGTCCGTGTGC 25
                                                         *  * ****  *** *    *****

consensus_5825#0      CTGTTCGGTGTGATGGAGGAATAGTGTCTCGTTTTGTATGCACGTAGTGTGTTTTTTTCG 600
consensus_5825#1      GTGTATA-TATTCCCTACGTTTTCTCCCCTGTTTTGTTTG-------TGTGTTTGTTTCG 77
                       ***    * *     * *  *  *  *  ******* **       ******* *****

consensus_5825#0      TACCAGAGGAGATGATGTCAAAGTGAAATCAACCGAAAAGCTTCCCCTTTTTTTAGCAGT 660
consensus_5825#1      CAATTGTGTTGCCTGTGCCTGTGTGTTTGAATCCTGCTCCAGCGAGACATAGAAAGCAGT 137
                       *   * *  *    ** *   ***     * **               *    ******

consensus_5825#0      TGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAG 720
consensus_5825#1      TGTACGTGTTCGTATTTAATGTGTGTGTGTGTCCCACAAAAATAAGTGTGCAATGTGAAG 197
                      ************************************************************

consensus_5825#0      TGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGT 780
consensus_5825#1      TGTGTTCCAAAATTGGTATATTGTGAAAAAACACAGTAAAATAAACGCAGAGTGGCATGT 257
                      ************************************************************

consensus_5825#0      GTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGT 840
consensus_5825#1      GTTGATAGCTTTAGTACTCAGTTGATCCGGTAATAAATTATCGCAAAACGATCAACGCGT 317
                      ************************************************************

consensus_5825#0      GTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGCGTTTCTAGCGAGAACCCATCCA 900
consensus_5825#1      GTTTTCCCCCACGATGACAACAAGCAGCGCTGCAAAGGTTTTCTAGCGAGAACCCATCCA 377
                      *************************************  *********************

consensus_5825#0      TCACACCGATCTCTGCAGTGTGTGTTAGTTCAGCACCGTCGTCTATAATCAGCGCCGGGT 960
consensus_5825#1      TCACACCGATCTCCGCAGTGTGTGTTAGTTCAGCACAGTCGTCT---------------- 421
                      ************* ********************** *******                

consensus_5825#0      GTTTGCCCGTCTTCGTTTCGGCTGTGCAGATTGGACGGCCCTACAATCGCGGTCCGGATC 1020
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      GATCCCGCGGTCCCGCAATGGTCGACTACTGTAACACACGATCGGCGACTAGTGCAGCTA 1080
consensus_5825#1      ------------------------------------------------------------
                                                                                  

consensus_5825#0      CCTCCATCGCGACTCCCGCCACCTTTCGGCCCGGCAAATCGCGGCATGGGAG 1132
consensus_5825#1      ----------------------------------------------------
                                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)