These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1157 fasta sequence [CCGGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATATGAATGTATTAAAACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTGTGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAAAAACACACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCGCAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTGTGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAACTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAGAAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAACCAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTAACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGCGCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC] [+] EMBL BM628790 [CCGGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATATGAATGTATTAAAACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTGTGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAAAAACACACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCGCAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTGTGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAACTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAGA ] [+] EMBL BM614785 [ cCGGGATATTATAAAGAAACAAGAGAAACGAATGTGTGTAGTATGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGAAGAAAAGTGATGTAAAACAGTGCAACAAATGAG TTTTTTTCCTATTAGAGGATAAAATCGAACTGG AAATGTAGAAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAACCAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTAACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGCGCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC] consensusID : consensus_5834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAAAGAAGAAGTACACACACACACACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACCCACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAAGTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCGAAGTGCAGAAGGTTGATTCACTTGACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAAAGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAAAAAACGAGCATGTCCAAATACAAATAACAGTTAATGATGCCACGAAGAGAAAGGAAAACTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT] [+] EMBL BX615505 [CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGTTATGTGAATAGAACAGAGTGTAAAGAAGAAGTACACACACACACACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGCCATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACCCACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAAGTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCGAAGTGCAGAAGGTTGATTCACTTGACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAAAGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAAAAAACGAGCATGTCCAAATACAAATAACAGTTAATGATGCCACGAAGAGAAAGGAAAACTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT] consensusID : consensus_5834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CATTAAACCGAAACCACTATTATGTGTGCTATACGCGCGCACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTTAAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATATGAATGTATTAATACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTATGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAACAAAAGGCAGGCATGTG] [-] EMBL BX466661 [CATTAAACCGAAACCACTATTATGTGTGCTATACGCGCGCACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTTAAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGAACAATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATATGAATGTATTAATACATAACAAAGTAAAACGATACAAGAACAGAAGCAAACTACACGATCAAAGTGTTGATCGATGCAAATCAATCGATCGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGAAAGAGAATGGAAACCCCCCGTTTAAGCCCGTTAAAATGTGTCTGAGTGTGTGTGAGTACATTTTAGTGAGAAAACTACTTCTTGTGTCAAGTTATGTGAATGTGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAAAAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTAAAGTTAAACACTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAACAAAAGGCAGGCATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5834#0 ------------------------------------------------------------ consensus_5834#2 -----------------CATTAAACCGAA--ACCACTATTATGTGTGCTATAC-GCGCGC 40 consensus_5834#1 CGATAATACCGAAAGCTCTCTGTGCCGACCTATAAATATATCAAGTTCAAAGCTGAGCGG 60 consensus_5834#0 ------------------------------------------------------------ consensus_5834#2 ACACACACACCCATACAATTTGCAGTAAAATGCAAAACAATCAGAAAATACAAAACGTTT 100 consensus_5834#1 AAAGGGAAAGAGATGTTATGTG-AATAGAACAGAGTGTAAAGAAGAAGTACACACACACA 119 consensus_5834#0 -------------------------------------------------------CCGGA 5 consensus_5834#2 AAAGCATTTGCTGCAAATAGCAAAAAATATAAACCGTTGACAGAAGAAAAGAAAAACAGA 160 consensus_5834#1 CACACATACACACACACACACACATACAACACCTAATTGTAAGGGACAGGCAGCAGCAAC 179 * consensus_5834#0 AC-AATGTGATTCATGCTCGAGTAGAAGAAGTAAGCTAATAT-----GAATGTATTAAAA 59 consensus_5834#2 AC-AATGTGATTCATGCTCGAGTAGAAGAAGTAAGTTAATAT-----GAATGTATTAATA 214 consensus_5834#1 TCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCTATTAAGC 239 * * *** ** * * * * ** ** * * ****** consensus_5834#0 CATAA--------CAAAGTAAAACGATACAAGAACAGA--AGCAAACTACACGATCAAAG 109 consensus_5834#2 CATAA--------CAAAGTAAAACGATACAAGAACAGA--AGCAAACTACACGATCAAAG 264 consensus_5834#1 CATCATTCTTTCCCGTATCCTATTGGTACGTGTATTGTTCAGTGTATTATACGTACGTA- 298 *** * * * * * *** * * * ** * ** *** * * consensus_5834#0 TGTTGATCGATGCAAATCAATCGAT-CGAAGCAGAGAGAAATGCAGAGAGAGAAAGAGA- 167 consensus_5834#2 TGTTGATCGATGCAAATCAATCGAT-CGAAGCAGAGAAAAATGCAGAGAGAGAAAGAGA- 322 consensus_5834#1 TGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGCAAAACAAAAAACC 358 **** **** * ** *** * * ** ** *** ** * * *** * consensus_5834#0 ---AAGAGAATGGAAACCCC--------CCGTTTAAGCCCGTTAAAATGTGTCTGAGTGT 216 consensus_5834#2 ---AAGAGAATGGAAACCCC--------CCGTTTAAGCCCGTTAAAATGTGTCTGAGTGT 371 consensus_5834#1 CACAAGAAAACTAACATTCAAAAGCAAACCAACAGAACTACTGAAAGCATTCTTTCTCAA 418 **** ** * * * ** * * * *** * * consensus_5834#0 GTGTGAGTACATTTTAGTGA-------GAAAACTACTTCTTGTGTCAAGTTGTGTGAATG 269 consensus_5834#2 GTGTGAGTACATTTTAGTGA-------GAAAACTACTTCTTGTGTCAAGTTATGTGAATG 424 consensus_5834#1 GTAAAACTACACTTTACAGACACACACAAACACAAAGAACTACAACAAAACGCGTCGCCG 478 ** * **** **** ** ** ** * * *** ** * consensus_5834#0 TGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAA 329 consensus_5834#2 TGTGAAAGTATTTTCTTCTGTGTGTAATTTAAAGAAACCGTTTAATCAAAAGCAGCAAAA 484 consensus_5834#1 AAGTGCAGAAGGTTGATTCACTTG-ACGGTAGGAAGATTGTATATAAAAAGAAAGGAAAA 537 ** * ** * ** * ** * * ** ** *** ** **** consensus_5834#0 AAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTA 389 consensus_5834#2 AAGAAGCGCAAAACAAACCCTCCTCCCAGCAGCAACACGCAACAAGCTCTCCCGGATTTA 544 consensus_5834#1 AGTTAAAGTAAAACACGATGCCCAGCAAATAAGACAACACAACCGACAAAGAGAGAAAAA 597 * * * ****** ** * * * * ** **** * ** * consensus_5834#0 AAGTTAAACA---CTAAAATCTACTGTCATATACTATAAAGCTACGAGAAAAA--AAACA 444 consensus_5834#2 AAGTTAAACA---CTAAAATCTACTGTCATATACTATAAAGTTACGAAAAAAATTAAAAC 601 consensus_5834#1 AAAACGAGCATGTCCAAATACAAATAACAGTTA--ATGATGCCACGAAGAGAAAGGAAAA 655 ** * ** * *** * * * ** ** ** * * **** * ** ** consensus_5834#0 CACACACACACATTTACATAAGCGTATATGAATATTCTTAAACGTTTTACTCTCTTTGCG 504 consensus_5834#2 AAAAGGCAGGCATGTG-------------------------------------------- 617 consensus_5834#1 CTCTCCCTACCGTGGTAATAAGGTAATACCGTGGAAATT--------------------- 694 * * * consensus_5834#0 CAAAAGAAAGAGTTGGTGCGGGATATTATAAAGAAACAAGAGAAACGAGTGTGTGTAGTG 564 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 TGTGCTCGATGTTTGTCGAATTGCAAAAGTCGATAGAAAAGGTATAAAAGTGATGTAAAA 624 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 CTGTGCAACAAATGAGATTTTTTTTCCTATTAGAGGATAAAATCGAACTGGCAAATGTAG 684 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 AAGAAACATGTATCGAGAAGAAGAAGAAAAGGGAAAGAGAAAAAAAGGATCGAAACAAAC 744 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 CAAAAAAAAAAAACAAATGAACAATGGAAGATACAATTTTAATTTAATGTGCATTACGTA 804 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 ACTACAAGAACGGAAAGGAAGGAAACAAACAAAAAAGCAAAACACGATAATACCGAAAGC 864 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 GCTCGGTGCCGAGCTATAAATATATCAAGTTCAAAGCTGAGCGGAAAGGGAAAGAGATGT 924 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 TATGTGAATAGAACAGAGTGTAACACACACACGCAACACCTAATTGTAAGGGACAGGCAG 984 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 CAGCAACTCTGGCATTATTTGCCTTCCGGCGGGAACCGAAACCGCGCATTTTTGGCACCT 1044 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 ATTAAGCCATCATTCTTTCCCGTATCCTATTGGTATGTGTATTGTTCAGTGTATTATACG 1104 consensus_5834#2 ------------------------------------------------------------ consensus_5834#1 ------------------------------------------------------------ consensus_5834#0 TACGTATGTTTATCGTGAGATATTTTGCGAGGTGTAACAATGACAAACAAAGC 1157 consensus_5834#2 ----------------------------------------------------- consensus_5834#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||