These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTTAAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG] [+] EMBL BM619656 [CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTTAAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGT ] [+] EMBL BM618318 [ ccgAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG] consensusID : consensus_5847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTACACTCACACATATTACCTTGNATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGCAAATGGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTGTGCATGAAAGGATAGAACAACAACAACAGCAAAAAAAAACAGGAAATTTTAAACAATGCATTAAAAACAAACATACAAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAACGTAACACATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGCTGCTANATGTGATAAACTTTAATG] [+] EMBL BX628880 [GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTACACTCACACATATTACCTTGNATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGCAAATGGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTGTGCATGAAAGGATAGAACAACAACAACAGCAAAAAAAAACAGGAAATTTTAAACAATGCATTAAAAACAAACATACAAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAACGTAACACATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGCTGCTANATGTGATAAACTTTAATG] consensusID : consensus_5847#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCAACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGTGATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAAACACAAATAAAAACAAAAACCATTAACATATAGTTTAGTACCCGTACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGAGAAAGAGTGTTGCTAACAAAACAATAAAACTAAATAAACCACCCC] [+] EMBL BM627319 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCAACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGTGATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAAACACAAATAAAAACAAAAACCATTAACATATAGTTTAGTACCCGTACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGAGAAAGAGTGTTGCTAACAAAACAATAAAACTAAATAAACCACCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5847#0 CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTT 60 consensus_5847#1 ------------------------------------------------------------ consensus_5847#2 ------------------------------------------------------------ consensus_5847#0 AAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGA 120 consensus_5847#1 ------------------------------------------------------------ consensus_5847#2 ------------------------------------------------------------ consensus_5847#0 GAGCAGTGTGAATGCCATCGCCATTCAGGTGG-TGTACATTCTGAAATGGAAAAAAAATC 179 consensus_5847#1 --GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACA 58 consensus_5847#2 -----------------CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACG 43 ** * ** ** ** * consensus_5847#0 AAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTG--CGCAATTTTG 237 consensus_5847#1 ACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTA--CACTCACACA 116 consensus_5847#2 CAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCA 103 * **** * * * * * consensus_5847#0 CTGTAGCGTGTGTGTAGAG-TGACGTGACTTTTAGTGGT-TTCCATGTTGAATAATAAGA 295 consensus_5847#1 TATTACCTTGNATCTTC------CTTATATTTTAACAATGTTCAATATTCATTAGCAAAT 170 consensus_5847#2 ACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGT 163 ** * ** * ** * * consensus_5847#0 GAAAAAGCGAAGAAAAG-AGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAA 354 consensus_5847#1 GGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTG-TGCATGAAA 229 consensus_5847#2 GATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAA 223 * * * * * * * * * * * * * *** consensus_5847#0 ACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGT 414 consensus_5847#1 GGATAGAACAACA------------ACAACAG-CAAAAAAAAACAGGAAATTTTAAACAA 276 consensus_5847#2 ACACAAATAAAAA-------------CAAAAACCATTAACATATAGTTTAG--TACCCGT 268 * * ** * * * * ** * * consensus_5847#0 TGCAACAAAAGGCATAAGCGTGTGAAAACA-AACAAAAAATGCAAC-AGAAACAAAATAG 472 consensus_5847#1 TGCATTAAAA---ACAAACATACAAAATCCCAACCATACGCAAACC-ACTAACAAAAGTG 332 consensus_5847#2 ACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGA 328 ** * * ** ** * * * * * * * ** * consensus_5847#0 AATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTA 532 consensus_5847#1 CACC-CGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAAC----------GTAACA 381 consensus_5847#2 GAAAGAGTGT-TGCTAACAAAACAATAAAACTAAATAAACCACCCC-------------- 373 * * * ** ** ** * * * * consensus_5847#0 AATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAAT 592 consensus_5847#1 CATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGC-TGCTANATGTGATAAAC 440 consensus_5847#2 ------------------------------------------------------------ consensus_5847#0 ATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG 639 consensus_5847#1 TTTAATG---------------------------------------- 447 consensus_5847#2 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||