cluster # 5847

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Anopheles gambiae
cluster # 5847 cluster # 5847 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5847#0 length = 639 sequences # 2

consensus_5847#1 length = 447 sequences # 1
consensus_5847#2 length = 373 sequences # 1

consensusID : consensus_5847#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence

                              [CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTTAAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG]

[+] EMBL BM619656             [CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTTAAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGT                                     ]
[+] EMBL BM618318             [                                                                          ccgAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGAGAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCAAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTGTAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAAAGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAACAAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG]




>consensus_5847#0
CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTT
AAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGA
GAGCAGTGTGAATGCCATCGCCATTCAGGTGGTGTACATTCTGAAATGGAAAAAAAATCA
AACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTGCGCAATTTTGCTG
TAGCGTGTGTGTAGAGTGACGTGACTTTTAGTGGTTTCCATGTTGAATAATAAGAGAAAA
AGCGAAGAAAAGAGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAAACATAA
GAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGTTGCAAC
AAAAGGCATAAGCGTGTGAAAACAAACAAAAAATGCAACAGAAACAAAATAGAATTTCCT
GCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTAAATACACC
CGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAATATTCATTA
GTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG

consensusID : consensus_5847#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTACACTCACACATATTACCTTGNATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGCAAATGGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTGTGCATGAAAGGATAGAACAACAACAACAGCAAAAAAAAACAGGAAATTTTAAACAATGCATTAAAAACAAACATACAAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAACGTAACACATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGCTGCTANATGTGATAAACTTTAATG]

[+] EMBL BX628880             [GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTACACTCACACATATTACCTTGNATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGCAAATGGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTGTGCATGAAAGGATAGAACAACAACAACAGCAAAAAAAAACAGGAAATTTTAAACAATGCATTAAAAACAAACATACAAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAACGTAACACATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGCTGCTANATGTGATAAACTTTAATG]




>consensus_5847#1
GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACAAC
CAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTACACTCACACATATT
ACCTTGNATCTTCCTTATATTTTAACAATGTTCAATATTCATTAGCAAATGGGTGACCGA
AATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTGTGCATGAAAGGATAGAACAA
CAACAACAGCAAAAAAAAACAGGAAATTTTAAACAATGCATTAAAAACAAACATACAAAA
TCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGNAAAGGGTTAAAACAA
GGNCAGAATTTCAACGTAACACATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGC
TGCTGCTANATGTGATAAACTTTAATG

consensusID : consensus_5847#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCAACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGTGATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAAACACAAATAAAAACAAAAACCATTAACATATAGTTTAGTACCCGTACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGAGAAAGAGTGTTGCTAACAAAACAATAAAACTAAATAAACCACCCC]

[+] EMBL BM627319             [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACGCAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCAACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGTGATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAAACACAAATAAAAACAAAAACCATTAACATATAGTTTAGTACCCGTACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGAGAAAGAGTGTTGCTAACAAAACAATAAAACTAAATAAACCACCCC]




>consensus_5847#2
CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACGCAAACCACTAACAAAAG
TGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCAACGTAACACATAGAGAG
AGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGTGATAAACTTTAACGAGG
TAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAAACACAAATAAAAACAAA
AACCATTAACATATAGTTTAGTACCCGTACCAAGATGATGTCCAAGAGAGGGAAGAAAGA
GAGAGAGAGAGAACGAGAGATAATAGGAGAAAGAGTGTTGCTAACAAAACAATAAAACTA
AATAAACCACCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5847#0      CCGCCACAGTATTGTCACTAACCCCTTTGAAGCCAAATAGCGAAAAATGCATGTAAACTT 60
consensus_5847#1      ------------------------------------------------------------
consensus_5847#2      ------------------------------------------------------------
                                                                                  

consensus_5847#0      AAATTACACCAAATAATAAAGAAACAAATGAGAGTGCAGCACACCACACACAGAGAGAGA 120
consensus_5847#1      ------------------------------------------------------------
consensus_5847#2      ------------------------------------------------------------
                                                                                  

consensus_5847#0      GAGCAGTGTGAATGCCATCGCCATTCAGGTGG-TGTACATTCTGAAATGGAAAAAAAATC 179
consensus_5847#1      --GAAACATATAAACCATCGGCAGCGTTCTAAATAGAATTTCCTGCATACAAAAGTCACA 58
consensus_5847#2      -----------------CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCAACCATACG 43
                                        ** *                  **    **   **    *  

consensus_5847#0      AAACAAAATAACAAAAAAATAAACTAAACTATAGCAAAACTAAATGTG--CGCAATTTTG 237
consensus_5847#1      ACCAAAAGAAACATATAAACCATCGGCAGCGTTCTAAATACACCCGTA--CACTCACACA 116
consensus_5847#2      CAAACCACTAACAAAAGTGCACCCGGGGATGTAAAGGGTTAAAACAAGGCCAGAATTTCA 103
                            *  **** *        *       *         *        *         

consensus_5847#0      CTGTAGCGTGTGTGTAGAG-TGACGTGACTTTTAGTGGT-TTCCATGTTGAATAATAAGA 295
consensus_5847#1      TATTACCTTGNATCTTC------CTTATATTTTAACAATGTTCAATATTCATTAGCAAAT 170
consensus_5847#2      ACGTAACACATAGAGAGAGACAAAACAAAATTAAAATGCATTTCCGCTGCTGCTAGATGT 163
                         ** *                       ** *      **     *        *   

consensus_5847#0      GAAAAAGCGAAGAAAAG-AGAGAGAGATAGGAAGGAAGGGAAAAATAGGAACAAACAAAA 354
consensus_5847#1      GGGTGACCGAAATCAATCACTGCTAGATAATAGACAGGGCAGGGACAGTG-TGCATGAAA 229
consensus_5847#2      GATAAACTTTAACGAGGTAAAACAAACAAGTATATATGACAAGAAAGAAAAGAAAAAAAA 223
                      *    *    *   *   *     *   *  *   * *  *   *         *  ***

consensus_5847#0      ACATAAGAAAATACATCCGCCCTGTTTAGTAGTCTTTAAAATGCCACTAGCCTTGGTTGT 414
consensus_5847#1      GGATAGAACAACA------------ACAACAG-CAAAAAAAAACAGGAAATTTTAAACAA 276
consensus_5847#2      ACACAAATAAAAA-------------CAAAAACCATTAACATATAGTTTAG--TACCCGT 268
                        * *    ** *              *  *  *   ** *            *      

consensus_5847#0      TGCAACAAAAGGCATAAGCGTGTGAAAACA-AACAAAAAATGCAAC-AGAAACAAAATAG 472
consensus_5847#1      TGCATTAAAA---ACAAACATACAAAATCCCAACCATACGCAAACC-ACTAACAAAAGTG 332
consensus_5847#2      ACCAAGATGATGTCCAAGAGAGGGAAGAAAGAGAGAGAGAGAGAACGAGAGATAATAGGA 328
                        **  *  *     **       **     *   * *     * * *   * ** *   

consensus_5847#0      AATTTCCTGCATACAAAAGTCACAACCAAAAGAAACATATAAACCATCGGCTGCGTTCTA 532
consensus_5847#1      CACC-CGGGGATGNAAAGGGTTAAAACAAGGNCAGAATTTCAAC----------GTAACA 381
consensus_5847#2      GAAAGAGTGT-TGCTAACAAAACAATAAAACTAAATAAACCACCCC-------------- 373
                       *      *  *   **      **  **    *  *    * *                

consensus_5847#0      AATACACCCGTACACTCACACATTACCTTGTATCTTCCTTATATTTTAACAATGTTCAAT 592
consensus_5847#1      CATAGAGAGATATAAAACNAAATTAGAATGCATTTCCGCTGC-TGCTANATGTGATAAAC 440
consensus_5847#2      ------------------------------------------------------------
                                                                                  

consensus_5847#0      ATTCATTAGTAAATGGGTGACCGAAATCAATCACTGCTAGATAATAG 639
consensus_5847#1      TTTAATG---------------------------------------- 447
consensus_5847#2      -----------------------------------------------