These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 705 fasta sequence [CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTGCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATC] [+] EMBL BM624520 [CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTGCTACTCGGAGTTATTATAGGCTTTACGTTT ] [+] EMBL BM621890 [ ccgGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCG TTGCTGCTGCTGCTGCTGTTGTTGCCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGCTTCGGATGTGTTCAGTGTACGAGATGGCACAAAGTCAGCAGAGCTTTTTGAAACAGGAAGCGGGTCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATC] consensusID : consensus_5856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTTATGCGCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACACGTCGCTGCTAAATGCAATCC] [+] EMBL BM620160 [CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTTTGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGCACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAGCAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTTGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTATCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACGAAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCGTGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTTATGCGCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACACGTCGCTGCTAAATGCAATCC] consensusID : consensus_5856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [CCGCCCACGCGTCCGCGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTGATGCGCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGGGAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG] [+] EMBL BM621155 [CCGCCCACGCGTCCGCGCTGCTGAAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCTGAGCGGTGTCCTACTCGGAGTTATTATAGGCTTTACGTTTCGTCCGCTAGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTGATGCGCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCAGCCTGAACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGACCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGGGAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5856#0 ---------------CCGGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTT 45 consensus_5856#1 CCGCGGACGCGTGGGCGAGCCGCGTTGGATGTAGCCGCGACTGGGCGTTGTGGTGCTGTT 60 consensus_5856#2 ------------------------------------------------------------ consensus_5856#0 TGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGC 105 consensus_5856#1 TGTGGTTGTGTTGGCTGTGCGTTGTGGCTTGCCTAGCTTCAGCTTCAGTGCGCTCGGTGC 120 consensus_5856#2 ------------------------------------------------------------ consensus_5856#0 ACCACTGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAG 165 consensus_5856#1 ACCACCGAGCACCAATTGGGGCCGCTCTCCTTTCAACCCCCGTGCACCGGTGCAGCAGAG 180 consensus_5856#2 ------------------------------------------------------------ consensus_5856#0 CAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTT 225 consensus_5856#1 CAGTGTGACGACGCGGCCTGTAATGGCAAAGGGTGGCCGCTGTTGCTGTTGGATGTCGTT 240 consensus_5856#2 ------------------------------------------------------------ consensus_5856#0 TGCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTA 285 consensus_5856#1 -GCTGCTGCTGCTGCTGTTGTTGTCGTCGTCGTCGGCCAGTCTTCCCACTAAAAGGATTA 299 consensus_5856#2 ------------------------------------------------------------ consensus_5856#0 TCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACG 345 consensus_5856#1 TCAGCGGCGATAGCGAATGTCGCCGCGGCTCGTGCAGTTGTTGTAGTGGCGTAAACAACG 359 consensus_5856#2 -------------------------------------CCGCCCACGCGTCCGCGCTGCTG 23 * * * * * consensus_5856#0 AAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCG 405 consensus_5856#1 AAACTGCTTCACCCTGATTCGCGCAGGGCGCATCTTCGACCTGGTTGCGGTGCGGTGCCG 419 consensus_5856#2 AAGATGGCGGACCACCGTTCGAGCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTG 83 ** ** *** **** ** ** * * * * * * * * * * consensus_5856#0 TGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGCGATCACCGAAAAGCGCCTGC 465 consensus_5856#1 TGGAGGAAGTGACTGTGTGCGATTGCAGGAAGGCTAAAGGCTTTAC---GTTTCGTCCGC 476 consensus_5856#2 ATTACGCTGAG-CGGTGTCCTACT-CGGAGTTATTATAGGCTTTAC---GTTTCGTCCGC 138 * * * * * **** * * * * * ** ** * ** ** * ** consensus_5856#0 TTCGGATGTGTTCAGTG-----TACGAGATGG-CACAAAGTCAGCAGAGCTTTTTGAAAC 519 consensus_5856#1 T--AGGTTTGTCCAGCGACTCGCTCATGCTGATCGCCTACCCTGGAGAGCTATTT-ATGC 533 consensus_5856#2 T--AGGTTTGTCCAGTGACTCGCTCATGCTGATCGCCTATCCTGGAGAGCTATTG-ATGC 195 * * * *** *** * * * ** * * * * * ****** ** * * consensus_5856#0 AGGAAGCGGGCCAGTTGAGCAGAGAGGACACGCTGCTGAAGATGGCGGACCACCGTTCGA 579 consensus_5856#1 GCGTGCTAAAGCTGATGATTCTTCCCCTCGTGATAGCGAGCCTCATCAGCGGCTCGTCCA 593 consensus_5856#2 GCGTGCTGAAGCTGATGATTCTTCCCCTGGTGATAGCGAGCCTCATCAGCGGCTCGTCCA 255 * * * *** * * ** * * * ** * consensus_5856#0 GCTGGAGTCGCGTGCTGGCGGACAACAAACTGATCCTGATTACGCT-GAGCGGTGTGCTA 638 consensus_5856#1 GCCTGA---ACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGA 650 consensus_5856#2 GCCTGA---ACGCGAAGCTGAACGGCAAGATAGCGCTCCGTACGTTTGTGTACTTTCTGA 312 ** ** ** * * * ** *** * ** **** * * * * * * consensus_5856#0 CTCGGA--GTTATTATAGGCTTTACGTTTCGTCCCGCTAG-GTTTGTCCAGTGACTCGCT 695 consensus_5856#1 CACGTC--GCTGCTAAATGCAATCC----------------------------------- 673 consensus_5856#2 CCACGATCGCTGCTAAATGCAATCCTCGGCACTACACTGGCGCTTATCATACACCCGGGG 372 * * * ** * ** * * consensus_5856#0 CATGCTGATC-------------------------------- 705 consensus_5856#1 ------------------------------------------ consensus_5856#2 GAATCCGACCGCTGAAAGTGCGGCGCACACGGAGCTACTTCG 414 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||