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Anopheles gambiae
cluster # 587 cluster # 587       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_587#0 length = 684 sequences # 1  
consensus_587#1 length = 319 sequences # 1  

consensusID : consensus_587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence
                              [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT]

[+] EMBL BM621198             [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT]


>consensus_587#0 CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAAC CGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGA AAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGC TGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACC ATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTG TTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAAT AAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAA AGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCT TTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTT TAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCA GGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAA GTTAAAATGGATTTCACATTGGAT



consensusID : consensus_587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence
                              [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT]

[+] EMBL BM624803             [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT]


>consensus_587#1 TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTT CCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTAC CATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAA AAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCT GTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACA ATTTTGGACTGATCCCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_587#0      CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAAC 60
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      CGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGA 120
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      AAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGC 180
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      TGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACC 240
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      ATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTG 300
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      TTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAAT 360
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      AAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAAC-CAACA 419
consensus_587#1      ---------TCCGCATGCGAAGAGCCCCTCGCTGGGT-GTCCTCATACTGACACTCAACT 50
                               ** *   *      * * ** *    * * **** * *  * ** **** 

consensus_587#0      AAGCTTTCTTACAGAC-CATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGT 478
consensus_587#1      TGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGC---------TAC 101
                       *** * ** * * * **     * * **   ***   *** ****          *  

consensus_587#0      CTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATC-TTCTAC 537
consensus_587#1      CGGGGACCGGAGGTG-----GTACCATGCTCCGTGACA-TCGATATATCAGCCATTCTAC 155
                     *   * ***    **     * *  **     *** *  *   * **  *  * ******

consensus_587#0      TTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTT 597
consensus_587#1      ATTCGTT-CAGCGCTGGTTATGATAAAAG-------AGTAAGACCG-AACTATG------ 200
                      **   * *      * **** * * * *       * *   ***  ******       

consensus_587#0      TCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 657
consensus_587#1      -GAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 259
                       *********** **********************************************

consensus_587#0      GAAGTTAAAATGGATTTCACATTGGAT--------------------------------- 684
consensus_587#1      GAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT 319
                     ***************************                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)