These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT] [+] EMBL BM621198 [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT] consensusID : consensus_587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT] [+] EMBL BM624803 [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_587#0 CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAAC 60 consensus_587#1 ------------------------------------------------------------ consensus_587#0 CGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGA 120 consensus_587#1 ------------------------------------------------------------ consensus_587#0 AAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGC 180 consensus_587#1 ------------------------------------------------------------ consensus_587#0 TGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACC 240 consensus_587#1 ------------------------------------------------------------ consensus_587#0 ATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTG 300 consensus_587#1 ------------------------------------------------------------ consensus_587#0 TTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAAT 360 consensus_587#1 ------------------------------------------------------------ consensus_587#0 AAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAAC-CAACA 419 consensus_587#1 ---------TCCGCATGCGAAGAGCCCCTCGCTGGGT-GTCCTCATACTGACACTCAACT 50 ** * * * * ** * * * **** * * * ** **** consensus_587#0 AAGCTTTCTTACAGAC-CATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGT 478 consensus_587#1 TGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGC---------TAC 101 *** * ** * * * ** * * ** *** *** **** * consensus_587#0 CTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATC-TTCTAC 537 consensus_587#1 CGGGGACCGGAGGTG-----GTACCATGCTCCGTGACA-TCGATATATCAGCCATTCTAC 155 * * *** ** * * ** *** * * * ** * * ****** consensus_587#0 TTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTT 597 consensus_587#1 ATTCGTT-CAGCGCTGGTTATGATAAAAG-------AGTAAGACCG-AACTATG------ 200 ** * * * **** * * * * * * *** ****** consensus_587#0 TCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 657 consensus_587#1 -GAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 259 *********** ********************************************** consensus_587#0 GAAGTTAAAATGGATTTCACATTGGAT--------------------------------- 684 consensus_587#1 GAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT 319 *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||