These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 918 fasta sequence [GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGCAAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAATAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACATTTTGAAACAGTTGAGTGT] [+] EMBL BX608884 [GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGCAAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTC ] [+] EMBL BM623031 [ ccgAAAGTAAGAAGCAAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACTGTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAACGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGATGATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCCAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGC ] [+] EMBL BX613430 [ CAATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTTAGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCACCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCATGAAATCTTTTAAACTTTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTGATTTTGACATATCAACCTTGTTTTTATTAGCAAAAAGTTGACATTTAGAAAACGAGAAAACAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATGCATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGCAAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAATAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACATTTTGAAACAGTTGAGTGT] consensusID : consensus_5874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence [GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGGTTATGTTTTGTGTGTCTTGAACCACCTGATCGTTA] [+] EMBL BM640455 [GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATCAGGATGAGCTGAATTTTTGGGGTTATGTTTTGTGTGTCTTGAACCACCTGATCGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5874#0 GATGTTTCCTGCGCGGAACACTTTAAACATTCGACGGAAAAAATAATGTTAAACGACGGC 60 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AAACAAGAAACTGTTTTTGGTTAAAACATTTCCACCAATGTGACACTTAAAGTAAGAAGC 120 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AAAGTGGGCCATGTTGTGCTGCGAATTGCATAGTGTTGGGCGTATTCCGCTGCATTTACT 180 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 GTTTGCTTTGTAAGAATCTCTCATGACAACTCCTGAAAGTATGCAATACGCGCGACAGAA 240 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 CGTTTTTGTTTAACAAAAATAAGACCATAAATAATAATCGAAAGAGTTGTTAAAAATGAT 300 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 GATGATTTCGATAAACGTTCTGATTGAGTTTTTTCGAGGTTGTGTGCATCACAGCGAGCC 360 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AATGTTGAGGTTGTATTGCAGTTGAGCCAATGTTGAGG-AATCTTGCATATCAGTTGATC 419 consensus_5874#1 -----------------------GAGCCAATGTTGAGGGAATCTTGCATATCAGTTGATC 37 *************** ********************* consensus_5874#0 AGGATGAGCTGAATTTTTGGGTTTATGTTTTTTGTGTGTGTTTGTGTGTGTCTTGAACCA 479 consensus_5874#1 AGGATGAGCTGAATTTTTGGGGTTATGTTTT--------------GTGTGTCTTGAACCA 83 ********************* ********* *************** consensus_5874#0 CCTGATCGTTAACCACATATCCGCAATCTACACATTTCAAATCACGAAATCTTTTAAACT 539 consensus_5874#1 CCTGATCGTTA------------------------------------------------- 94 *********** consensus_5874#0 TTAAAGCAACCATAATTACTTGAAAAGAAAAAGCAATCGTAATACAGGAAGCACGCGTTG 599 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 ATTTTGACATATCAACCTTGTTTTTACTAGCAAAAAGTTGACATTTAGAAAACGAGAAAA 659 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 CAGTTTTGTATTCAGTGCATCATTTAAAAAAAAACAATGGAATTAAGGCAAAGAGTTATG 719 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 CATTTGTTTAAACTGGCAAGTAAATAATAGTAATGCAGAGAATAACCACCTGAGCGAGGC 779 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AAGAACAGCTCAAGAATGAGTTTTGTGCTCTTTACAGTAAAATTGAGGCTAGCAACACAA 839 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 TAAATACGAAAAAATATCTAAGTGTGTGAATTGGTGGAAAATTACATTTGGAGTAACACA 899 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 TTTTGAAACAGTTGAGTGT 918 consensus_5874#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||