These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1496 fasta sequence [CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATTTCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAAGAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTCGCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAGGAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTATGTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATCTTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTTCCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGAGTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCAGAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCAAGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCACACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG] [+] EMBL BM625215 [CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATTTCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAAGAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTCGCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAGGAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTATGTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATCTTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAA ] [+] EMBL BX617969 [ GAGAGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGACAAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAACAAGAACTTGGACTTCTTTCAGCGTCGCCAACAAGAGGTGGACGACAAGCTCGGCCTGAACAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTTCCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGG ] [+] EMBL BX628734 [ AGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGAGTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCAGAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCAAGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCACACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG] consensusID : consensus_5884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCCACGCGTCCGCTCGGTCTGAACAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTTCCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACC] [+] EMBL BM641668 [CCCACGCGTCCGCTCGGTCTGAACAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGATCAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGATCGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGCGATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTTCCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAAGCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTACCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTATCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGAGGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCGTGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACGCAGCGTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5884#0 CCGGCCATTGCGGGAAGTGAGGGCGAATTCGGCGAAGGCCCGACAGTGCCGGACGAGATT 60 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 TCGGAGGCTCACAACATGCTCGTTCCGGGCGTAGTGGATCGGGGCACGCCGCACTACGAA 120 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GAGCACGACGAGTTTAGCAGCAGTTCGTTCGACAGTGACTCGGAAGATGGGGAACCGTTC 180 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GCGGTGCGGCCAGATTCGAACAGTTCACTCAAAACAGCTCGCGTATCAAGCATTCTACAG 240 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GAGCTGTTGGCAAACGAGGCGAACTACGTGCAAACGCTTGGCCGCGGGATCGAAAACTAT 300 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GTCAGCATAATGGCGGGGAAAAACCTTCCCCCGGGACTGCGGGGCCAGAAGTATCACATC 360 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 TTTGGAAATATTGAAAAGATTCATAACCTTCACCAGAACCAGTTTCTGCCGATGCTGGAG 420 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 AGCAATCGGGCTAGCATAGCTGGCATTGCGGAAACGTTCATCTGGTTCCTGGAGAATGAC 480 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 AAGTTCTACTGCTACATCATGTTTGCGCTGAACCGTCCCAAGTCGGAGCGAATATGCAAC 540 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 AAGAACTTGGACTTCTTTCAGCGTCGCCAGCAAGAGGTGGACG-ACAAGCTCGGCCTGAA 599 consensus_5884#1 -------------------------------------CCCACGCGTCCGCTCGGTCTGAA 23 *** ****** ***** consensus_5884#0 CAGTTTCCTGCTGCAGCCAATCCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGAT 659 consensus_5884#1 CAGTTTCCTGCTGCAGCCAATTCAGCGGCTGCCCCGCTACAAACTCCTGCTAGCCGAGAT 83 ********************* ************************************** consensus_5884#0 CAACAAGGAGATCCTGAAGCAGCTCGAGGACACACTGCTGGAATCGGTCAAGGACGAGAT 719 consensus_5884#1 CAACAAGGAGATCCTAAAGCAGCTCGAGGACACACTGCTGGAGTCGGTCAAGGACGAGAT 143 *************** ************************** ***************** consensus_5884#0 CGGTATCCTGTGCAAGGCGGATAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGC 779 consensus_5884#1 CGGTATCCTGTGCAAGGCGGAGAAGCGGCTCGAGCGCTTCATCGACATCGTAAACGAGGC 203 ********************* ************************************** consensus_5884#0 GATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTATTCAGGGCAAGTT 839 consensus_5884#1 GATGAGCATCAACGACATCCAAGAGTGTTATGAGATTAACCTGTTTAGTCAGGGCAAGTT 263 *********************************************** ************ consensus_5884#0 CCGGAAGATGTTCGAGGTTGACATCTACGATTGGGACCATCGGCGGCTCTATCCGGCGAA 899 consensus_5884#1 CCGGAAGATGTTTGAGGTTGACATCTACGATTGGGACCATCGGCGGCGCTATCCGGCGAA 323 ************ ********************************** ************ consensus_5884#0 GCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTA 959 consensus_5884#1 GCTGTTCCTGTTCGAACGGAGCGCCATCTATGCGGAGAAGGTCAAAACCCATCTCGAGTA 383 ************************************************************ consensus_5884#0 CCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTA 1019 consensus_5884#1 CCGCGGCCGGTACGACGAGTCGGAGATCGGCATGCACAACGAGAACCGCAACAAGGTGTA 443 ************************************************************ consensus_5884#0 TCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGA 1079 consensus_5884#1 TCTGTACGCGAGAAAGCGTGGCATACAGGAGATCGAGGTGACCTGCGGCGACATGAACGA 503 ************************************************************ consensus_5884#0 GGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCG 1139 consensus_5884#1 GGCGCAGCGTCTGTCCACACACGTCGAGAAGATGATGTGCGAGTTTGCGGTGAACGAGCG 563 ************************************************************ consensus_5884#0 TGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACG 1199 consensus_5884#1 TGACCGCATCAACACGATGGTGCGCCCCCGGATACCGAGCGTGATGACGATCAATCGACG 623 ************************************************************ consensus_5884#0 CAGCGTTACCAGCATGATGTCCGGCACTGGTCCTGTGAATAGTATGCGAGAAAGCTACGA 1259 consensus_5884#1 CAGCGTTACC-------------------------------------------------- 633 ********** consensus_5884#0 GTCCACCTCACAAACCACCTGGAGCACCGATAAACCGATCGCACAGCTTGCAATTATGCA 1319 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GAAGAACTTTTGCCGAATATTGGCCGCTAACCGGCGCTACTACTTCCACGATCTGCCGCA 1379 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 AGAGATCGCCTCCCGTGTGGCGGAGTTTATGCGCGTGTACGATCGCATACTACATTTCCA 1439 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 CACTAAGCGCTTGTACGAGGATTTGTCACGGGCCGACATTGGGATCGATGAGGTGTG 1496 consensus_5884#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||