cluster # 5885

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Anopheles gambiae
cluster # 5885 cluster # 5885 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5885#0 length = 1058 sequences # 3

consensus_5885#1 length = 582 sequences # 1

consensusID : consensus_5885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1058
fasta sequence

                              [CCGCCCACGCGTCCGGGGAAGGTGGTCAGTCGTGTGCTATCACGAGTCGGAACGGATTGCCTTGCTAGAATATAACGGTGCGTGGGGGGGTGCTGTAACAGAGTTTCCATATCAAGTGAAAATTGGAAAAGTGGTCCTTTTGTATAAAGCAGTGTCATCACTAGCCCTTTCTGTGAAAGAAAAGCACCAATGGCACGGTGCTAGTCGGTCTGTCTGCACGGCCAAGAGCACCTTCAATCTGTCTGTCTGTGTGTGTATTGTCCGATAAAAAATGGAATAAGTTTAATTAGCAAACCTCTTTGTGTACGTGTGTTTGTGTGAGTGAGTGTGCTAAACGGTCCTAAGAAAACCAACTATGTGAACAACTGGGTGAAGAAAATTCGTGCAAAAGTGGCTGATAAGAGTGTGCACACGAAAAAAAAGGAAGCAAAAATCAATTATCTGCAGGCAAAAGGGGGAGAACGTCCAATATATTTGGTAACAGCTGGGGCAAGCAAAAAAGAATACAAAAGTTGGCACCAGCTGCACCAAACCCTGCTGCAGCAGTGGGGACCAATTTTCGAATCAATAATTGGTCCATCGTGAATCAGTGACAGTCGGCTGGGCGGACGGCATAATCGGCATTGGAGTTGGCTGTGTTCGGGTAGCAAACATGATACGACTGAGTTAGGTTGCGGTCGCACTAGCACCAGACCTCAATGTCGCCATCAGTAAGCGAAAAAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGTACCAGCGTCAACAGTATCGTGCCCGCGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGCGCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAAGCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCACACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGCTCTCCCTTTCTCTCTCGCTCGCGGCGCTCTCGGCAGTTGCCGCACACTGTTGCATTTCA]

[+] EMBL BM654153             [CCGCCCACGCGTCCGGGGAAGGTGGTCAGTCGTGTGCTATCACGAGTCGGAACGGATTGCCTTGCTAGAATATAACGGTGCGTGGGGGGGTGCTGTAACAGAGTTTCCATATCAAGTGAAAATTGGAAAAGTGGTCCTTTTGTATAAAGCAGTGTCATCACTAGCCCTTTCTGTGAAAGAAAAGCACCAATGGCACGGTGCTAGTCGGTCTGTCTGCACGGCCAAGAGCACCTTCAATCTGTCTGTCTGTGTGTGTATTGTCCGATAAAAAATGGAATAAGTTTAATTAGCAAACCTCTTTGTGTACGTGTGTTTGTGTGAGTGAGTGTGCTAAACGGTCCTAAGAAAACCAACTATGTGAACAACTGGGTGAAGAAAATTCGTGCAAAAGTGGCTGATAAGAGTGTGCACACGAAAAAAAAGGAAGCAAAAATCAATTATCTGCAGGCAAAAGGGGGAGAACGTCCAATATATTTGGTAACAGCTGGGGCAAGCAAAAAAGAATACAAAAGTTGGCACCAGCTGCACCAAACCCTGCTGCAGCAGTGGGGACCAATTTTCGAATCAATAATTGGTCCATCGTGAATCAGTGACAGTCGGCTGGGCGGACGGCATAATCGGCATTGGAGTTGGCTGTGTTCGGG                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM626600             [          ccgctGGGAAGGTGGTCAGTCGTGTGCTATCACGAGTCGGAACGGATTGCCTTGCTAGAATAGAACGGTGCGTGTGTGTGTGCTGTAACAGAGTTTCCATATCAAGTGAAAATTGGAAAAGTGGTCCTTTTGTATAAAGCAGTGTCATCACTAGCCCTTTCTGTGAAAGAAAAGCACCAATGGCACGGTGCTAGTCGGTCTGTCTGCACGGCCAAGAGCACCTTCAATCTGTCTGTCTGTGTGTGTATTGTCCGATAAAAAATGGAATAAGTTTAATTAGCAAACCTCTTTGTGTACGTGTGTTTGTGTGAGTGAGTGTGCTAAACGGTCCTAAGAAAACCAACTATGTGAACAACTGGGTGAAGAAAATTCGTGCAAAAGTGGCTGAGAAGAGTGTGCACACGAAAAAAAAGGAAGCAAAAATCAATTATCTGCAGGCAAAAGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM625268             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgAAAAGTTGGCACCAGCTGCACCAAACCCTGCTGCAGCAGTGGGGACCAATTTTCGAATCAATAATTGGTCCATCGTGAATCAGTGACAGTCGGCTGGGCGGACGGCATAATCGGCATTGGAGTTGGCTGTGTTCGGGTAGCAAACATGATACGACTGAGTTAGGTTGCGGTCGCACTAGCACCAGACCTCAATGTCGCCATCAGTAAGCGAAAAAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGTACCAGCGTCAACAGTATCGTGCCCGCGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGCGCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAAGCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCACACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGCTCTCCCTTTCTCTCTCGCTCGCGGCGCTCTCGGCAGTTGCCGCACACTGTTGCATTTCA]




>consensus_5885#0
CCGCCCACGCGTCCGGGGAAGGTGGTCAGTCGTGTGCTATCACGAGTCGGAACGGATTGC
CTTGCTAGAATATAACGGTGCGTGGGGGGGTGCTGTAACAGAGTTTCCATATCAAGTGAA
AATTGGAAAAGTGGTCCTTTTGTATAAAGCAGTGTCATCACTAGCCCTTTCTGTGAAAGA
AAAGCACCAATGGCACGGTGCTAGTCGGTCTGTCTGCACGGCCAAGAGCACCTTCAATCT
GTCTGTCTGTGTGTGTATTGTCCGATAAAAAATGGAATAAGTTTAATTAGCAAACCTCTT
TGTGTACGTGTGTTTGTGTGAGTGAGTGTGCTAAACGGTCCTAAGAAAACCAACTATGTG
AACAACTGGGTGAAGAAAATTCGTGCAAAAGTGGCTGATAAGAGTGTGCACACGAAAAAA
AAGGAAGCAAAAATCAATTATCTGCAGGCAAAAGGGGGAGAACGTCCAATATATTTGGTA
ACAGCTGGGGCAAGCAAAAAAGAATACAAAAGTTGGCACCAGCTGCACCAAACCCTGCTG
CAGCAGTGGGGACCAATTTTCGAATCAATAATTGGTCCATCGTGAATCAGTGACAGTCGG
CTGGGCGGACGGCATAATCGGCATTGGAGTTGGCTGTGTTCGGGTAGCAAACATGATACG
ACTGAGTTAGGTTGCGGTCGCACTAGCACCAGACCTCAATGTCGCCATCAGTAAGCGAAA
AAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGTACCAGCGTCAACAGTATCGT
GCCCGCGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGC
GCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAA
GCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCAC
ACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGCTCTCCCTTTCTCTCTCGCTCG
CGGCGCTCTCGGCAGTTGCCGCACACTGTTGCATTTCA

consensusID : consensus_5885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [CCGCCGCTATCCCAGGCAATAAAGGAGGACTACTGTAGATGGCAAGGGCGATATTAGATAGTTACAAATTTATATACACTACACTCTTGGTATACATGTACACACTCCGCATACGTAACGGTGCGTTGGAGGCGTAGTTGAAAGCGAAAACGCTCGCCAAGAGGTGGGTGATCCCGGTGTGGGTGTAAAGTAAGCAGTAACCAGTCCCAAACTCCCCACGGCAAACCAACGCAAAAGCAATAAGACACGCGGCATACAAGATTCATCCAGTTTGCAACACTAGGCGTCATCTTCAGGTTGTTCATTTGTTTTTCCTCTTTTAAAACAATAATTAAAGCGGAAGCTATTTTTGTTTTTACCCTCACCCTGGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGCGCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAAGCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCACACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGC]

[+] EMBL BM651113             [CCGCCGCTATCCCAGGCAATAAAGGAGGACTACTGTAGATGGCAAGGGCGATATTAGATAGTTACAAATTTATATACACTACACTCTTGGTATACATGTACACACTCCGCATACGTAACGGTGCGTTGGAGGCGTAGTTGAAAGCGAAAACGCTCGCCAAGAGGTGGGTGATCCCGGTGTGGGTGTAAAGTAAGCAGTAACCAGTCCCAAACTCCCCACGGCAAACCAACGCAAAAGCAATAAGACACGCGGCATACAAGATTCATCCAGTTTGCAACACTAGGCGTCATCTTCAGGTTGTTCATTTGTTTTTCCTCTTTTAAAACAATAATTAAAGCGGAAGCTATTTTTGTTTTTACCCTCACCCTGGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGCGCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAAGCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCACACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGC]




>consensus_5885#1
CCGCCGCTATCCCAGGCAATAAAGGAGGACTACTGTAGATGGCAAGGGCGATATTAGATA
GTTACAAATTTATATACACTACACTCTTGGTATACATGTACACACTCCGCATACGTAACG
GTGCGTTGGAGGCGTAGTTGAAAGCGAAAACGCTCGCCAAGAGGTGGGTGATCCCGGTGT
GGGTGTAAAGTAAGCAGTAACCAGTCCCAAACTCCCCACGGCAAACCAACGCAAAAGCAA
TAAGACACGCGGCATACAAGATTCATCCAGTTTGCAACACTAGGCGTCATCTTCAGGTTG
TTCATTTGTTTTTCCTCTTTTAAAACAATAATTAAAGCGGAAGCTATTTTTGTTTTTACC
CTCACCCTGGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTG
TGCGCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACT
TAAGCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGAC
CACACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5885#0      CCGCCCACGCGTCCGGGGAAGGTGGTCAGTCGTGTGCTATCACGAGTCGGAACGGATTGC 60
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      CTTGCTAGAATATAACGGTGCGTGGGGGGGTGCTGTAACAGAGTTTCCATATCAAGTGAA 120
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      AATTGGAAAAGTGGTCCTTTTGTATAAAGCAGTGTCATCACTAGCCCTTTCTGTGAAAGA 180
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      AAAGCACCAATGGCACGGTGCTAGTCGGTCTGTCTGCACGGCCAAGAGCACCTTCAATCT 240
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      GTCTGTCTGTGTGTGTATTGTCCGATAAAAAATGGAATAAGTTTAATTAGCAAACCTCTT 300
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      TGTGTACGTGTGTTTGTGTGAGTGAGTGTGCTAAACGGTCCTAAGAAAACCAACTATGTG 360
consensus_5885#1      ------------------------------------------------------------
                                                                                  

consensus_5885#0      AACAACTGGGTGAAGAAAATTCGTGCAAAAGTGGCTGATAAGAGTGTGCACACGAAAAAA 420
consensus_5885#1      -------------------CCGCCGCTATCCCAGGCAATAAAGGAGGACTACTGTAGATG 41
                                              ** *     *   ****  * *  *    * * *  

consensus_5885#0      AAGGAAGCAAAAATCAATTATCTGCAGGCAAAAGGGGGAGAACGTCCAATATATTTGGTA 480
consensus_5885#1      GCAAGGGCGATATTAGATAGTTACAAATTTATATACACTACACTCTTGGTATACATGTAC 101
                            ** * * *  **  *    *    * *        **      ****  **   

consensus_5885#0      ACAGCTGGGGCAAGCAAAAAAGAATACAAAAGTTGGCACCAGCTGCACCAAACCCTGCTG 540
consensus_5885#1      ACACTCCG--CATACGTAACGGTGCGTTGGAGGCGTAGTTGAAAGCGAAAACGCTCGCCA 159
                      ***    *  **  *  **  *        **  *         **   **  *  **  

consensus_5885#0      CAGCAGTGGGGACCAATTTTCGAATCAATAATTGGTCCATCGTGAATCAGTGACAGTCGG 600
consensus_5885#1      -AGAGGTGGG---TGATCCCGGTGTGGGTGTAAAGTAAGCAGT-AACCAGTCCCAAACTC 214
                       **  *****     **    *  *   *     **     ** ** ****  **  *  

consensus_5885#0      CTGGGCGGACGGCATAATCGGCATTGGAGTTGGCTGTGTTCGGGTAGCAAACATGATACG 660
consensus_5885#1      CCC-----ACGGCA-AACCAACGCAAAAG-------CAATAAGACACGCGGCAT-ACAAG 260
                      *       ****** ** *  *     **          *  *  *     *** * * *

consensus_5885#0      ACTGAGTTAGGTTGCGGTCGCACTAGCACCAGACCTCAATGTCGCCATCAGTAAGCGAAA 720
consensus_5885#1      ATTCATCCAGTTTGCAA---CACTAGGCGTCATCTTCAGGTTGTTCATTTGTTTTT---- 313
                      * * *   ** ****     ******       * ***   *   ***  **        

consensus_5885#0      AAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGTACCAGCGTCAACAGTATCGT 780
consensus_5885#1      ---CCTCTTTTAAAACAATAATTAAAGCGGAAGC-----TATTTTTGTTTTTACCCTC-- 363
                         *  *      * ** **     *** * ***     **     **    *   **  

consensus_5885#0      GCCCGCGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGC 840
consensus_5885#1      ACCCTGGACGGCACCAACGAAACCACGGAAAGACGGCCACTTCGTAACCTTTTCTTGTGC 423
                       ***  ******************************************************

consensus_5885#0      GCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAA 900
consensus_5885#1      GCTTCCTACGTTTCTAGCGCACTTCCCCCTTTTCGCTCTCCTGTTTTCTCTGACACTTAA 483
                      ************************************************************

consensus_5885#0      GCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCAC 960
consensus_5885#1      GCTACACATACACTCTGACGCCACTGTCAAGCAACGTGTGAGAGTACACAAACCGACCAC 543
                      ************************************************************

consensus_5885#0      ACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGCTCTCCCTTTCTCTCTCGCTCG 1020
consensus_5885#1      ACATACAAGTGTCTTCTGTTATCCTTTGCGCTCGCTCGC--------------------- 582
                      ***************************************                     

consensus_5885#0      CGGCGCTCTCGGCAGTTGCCGCACACTGTTGCATTTCA 1058
consensus_5885#1      --------------------------------------