These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1174 fasta sequence [CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC] [+] EMBL BM626568 [CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATC ] [+] EMBL BM648922 [ ccgGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATGTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC] consensusID : consensus_5888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC] [+] EMBL BX467614 [GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC] consensusID : consensus_5888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT] [+] EMBL BX617418 [AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATA 60 consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 GGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAG 120 consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 TTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGA 180 consensus_5888#1 --------------------------------------------------GAGGCAGAAT 10 consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 GAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCT 240 consensus_5888#1 CCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGA-GATGTAGC 69 consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 CTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATAC 300 consensus_5888#1 AAAAATAGA-ATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGAC 128 consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 ATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAA 360 consensus_5888#1 AAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGG 188 consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 ACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCA 420 consensus_5888#1 CAAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 244 consensus_5888#2 -AAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 55 consensus_5888#0 CTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCAC 480 * * ** * * * * * * ** * ** * * * * * ** consensus_5888#1 TTTC-----ACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 299 consensus_5888#2 TTTC-----ACACCACTTGCTGG-TGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 109 consensus_5888#0 TTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATT--CATTTTTTTAAACTTCTTTT 538 **** * ** ** * * * * ** * * ** * * * ** consensus_5888#1 GGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTA-ATATGTGG-TGTCTGTGTGTA 357 consensus_5888#2 GGAAACCTTCACGAGTGATTAGAACAGATTTTTGC-TA-ATATGTGG-TGTCTGTGTGTA 166 consensus_5888#0 CTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTG 598 * * * * * ** * **** * ** * ** **** * consensus_5888#1 GCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTA 417 consensus_5888#2 GCGACAGTTGCTTTCCATAT-CCGGCTGTTCCGGCCTCAG-CTTGGCTGACTTGGCTGTA 224 consensus_5888#0 AGGTCTTTTGCTGTGTGTGTTTTGTTTGTTT-GGTTTGATTTCTCGATCGATCAGGGGAA 657 * * ***** * * * * **** ** * * * * * * * * * consensus_5888#1 GAGATGGAGACAGAGCA------------GAGGTCAGTTTAGATTTGCGAT----CATTC 461 consensus_5888#2 GAGATGGAGACAGAGCA------------GAG-TCAGTTTAGATTTGC-AT----CATTC 266 consensus_5888#0 AAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCC 717 *** * ** **** * * ** *** *** * * * * consensus_5888#1 ACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGG--ATAGGAT 519 consensus_5888#2 ACCGT-TTTGCTACTAG-AACAAAACCC-ATCACTTTTGCT-AC-TCTAG---ATAGGAT 318 consensus_5888#0 AACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGT 777 * * *** * * * *** * * ** ** * * ** * ** * consensus_5888#1 ACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGA 579 consensus_5888#2 ACCAAG--AGGTTTT-----TTTGTATATTGT-CAACATGGTCACTCACAG--TTACG-- 366 consensus_5888#0 ACCTCCCCACCCCCCG--CTCCTACCCCAGAAACGAAACAGCCAACGGTGGA-TTATTGA 834 *** * * * * * ** * *** consensus_5888#1 ATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTG 639 consensus_5888#2 ATTACGTT--GATGATA-TGA-TCAC--AGAAGATCCA-GT------------------- 400 consensus_5888#0 TTTCTGACT-TATGACGTTAA-TTGGATGAAGAAAACAAAGGATACGAAACACGAAAATG 892 ** * *** * * * * * ** consensus_5888#1 ATCGTACNATTC------------------------------------------------ 651 consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 GTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGA 952 consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 ATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGA 1012 consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 GAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTC 1072 consensus_5888#1 ------------------------------------------------------------ consensus_5888#2 ------------------------------------------------------------ consensus_5888#0 ACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGT 1132 consensus_5888#1 ------------------------------------------ consensus_5888#2 ------------------------------------------ consensus_5888#0 TGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC 1174 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||