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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1174 fasta sequence
[CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC]
[+] EMBL BM626568 [CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATAGGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAGTTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGAGAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCTCTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATACATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAAACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCACTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCACTTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATTCATTTTTTTAAACTTCTTTTCTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATTTCTCGATCGATC ]
[+] EMBL BM648922 [ ccgGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTGAGGTCTTTTGCTGTGTGTGTTTTGTTTGTTTGGTTTGATGTCTCGATCGATCAGGGGAAAAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCCAACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGTACCTCCCCACCCCCCGCTCCTACCCCAGAAACGAAACAGCCAACGGTGGATTATTGATTTCTGACTTATGACGTTAATTGGATGAAGAAAACAAAGGATACGAAACACGAAAATGGTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGAATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGAGAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTCACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC]
consensusID : consensus_5888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC]
[+] EMBL BX467614 [GAGGCAGAATCCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGAGATGTAGCAAAAATAGAATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGACAAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGGCAAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTAGAGATGGAGACAGAGCAGAGGTCAGTTTAGATTTGCGATCATTCACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGGATAGGATACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGAATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTGATCGTACNATTC]
consensusID : consensus_5888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT]
[+] EMBL BX617418 [AAGAGACGCATGATCGATCCTTGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGACTTTCACACCACTTGCTGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGCGGAAACCTTCACGAGTGATTAGAACAGATTTTTGCTAATATGTGGTGTCTGTGTGTAGCGACAGTTGCTTTCCATATCCGGCTGTTCCGGCCTCAGCTTGGCTGACTTGGCTGTAGAGATGGAGACAGAGCAGAGTCAGTTTAGATTTGCATCATTCACCGTTTTGCTACTAGAACAAAACCCATCACTTTTGCTACTCTAGATAGGATACCAAGAGGTTTTTTTGTATATTGTCAACATGGTCACTCACAGTTACGATTACGTTGATGATATGATCACAGAAGATCCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 CTGATTAAACCATCGCACTGGTCTTGATTGTTTGTTGAAAGTTTTCCATTTTTTTGTATA 60
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 GGGTTTAAGCGTGAAGCGGTGATTAGTTAATTGTTCATTAGTAAAAGTAATGCGTATTAG 120
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 TTAGTTTAATTGATTTTTAATGTGAATAAGGGGTTTTGACGAATTTTGATCTTATGTTGA 180
consensus_5888#1 --------------------------------------------------GAGGCAGAAT 10
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 GAGTATGATTGACGGTTTCCGGAACAAATTTCCATTAGGATTTTAGGTTTTGCACTCTCT 240
consensus_5888#1 CCCGNCGAGGTACAGACACACACACAGAGGTAGNACAGAACTGATAAATGA-GATGTAGC 69
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 CTTTCTCTCCAACAAGAACACTTACTGCAAATGCACTTTTCTGGAAAAGAAAGATGATAC 300
consensus_5888#1 AAAAATAGA-ATACAAATTGGATGTTGTGGTTTTTTTTAATAGAAAACGTTAGAAGCGAC 128
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 ATACATAAATATATGTACTTACCTGTGCAATCACATTTCACGTTATGCACCCATAATGAA 360
consensus_5888#1 AAGCAATATCGGAACAGAGAATTAGGACTCGCACTTAGGAAAGGTTCCGCGTTCGAGAGG 188
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 ACAAATGTACTAAAGTATGTGTTTGTGTGTATGTAGAGTAGAACAAATTCACCCTTTTCA 420
consensus_5888#1 CAAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 244
consensus_5888#2 -AAGAGACGCATGATCGATCCT----TGAAGCTTAGCTGTCGGTTGAATTTCGAAAGGAC 55
consensus_5888#0 CTCGGTTTGTTTGTTTGTTTTTGTGATCATTCTCAAGTGCATATCCATTCACTCACTCAC 480
* * ** * * * * * * ** * ** * * * * * **
consensus_5888#1 TTTC-----ACACCACTTGCTGGGTGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 299
consensus_5888#2 TTTC-----ACACCACTTGCTGG-TGCAGGTATCTTGTGCCAAACCTCCATATCTCACGC 109
consensus_5888#0 TTTCCATTAGTAACATTTAGAAGTTTGAAGCATATATT--CATTTTTTTAAACTTCTTTT 538
**** * ** ** * * * * ** * * ** * * * **
consensus_5888#1 GGAAACCTTCACGAGTGATTAGAACAGATTTTTGCGTA-ATATGTGG-TGTCTGTGTGTA 357
consensus_5888#2 GGAAACCTTCACGAGTGATTAGAACAGATTTTTGC-TA-ATATGTGG-TGTCTGTGTGTA 166
consensus_5888#0 CTATTATTCTGTTACCAAGCAAAAGTTAAGCTTGCAAGCGTTTGCGTCTGCTTGTGCTTG 598
* * * * * ** * **** * ** * ** **** *
consensus_5888#1 GCGACAGTTGCTTTCCATATTCCGGCTGTTCCGGNCTCAGGCTTGGCTGACTTGGNTGTA 417
consensus_5888#2 GCGACAGTTGCTTTCCATAT-CCGGCTGTTCCGGCCTCAG-CTTGGCTGACTTGGCTGTA 224
consensus_5888#0 AGGTCTTTTGCTGTGTGTGTTTTGTTTGTTT-GGTTTGATTTCTCGATCGATCAGGGGAA 657
* * ***** * * * * **** ** * * * * * * * * *
consensus_5888#1 GAGATGGAGACAGAGCA------------GAGGTCAGTTTAGATTTGCGAT----CATTC 461
consensus_5888#2 GAGATGGAGACAGAGCA------------GAG-TCAGTTTAGATTTGC-AT----CATTC 266
consensus_5888#0 AAGAGGAAGTAAGAGTGTCCTTTCGCGCTGTGTGCACTTTTATTTTCTTACTCTCCCTCC 717
*** * ** **** * * ** *** *** * * * *
consensus_5888#1 ACCGGGTTTGCTACTAGGAACAAAAGCCGATCACTTTTGCNTACGTCTAGG--ATAGGAT 519
consensus_5888#2 ACCGT-TTTGCTACTAG-AACAAAACCC-ATCACTTTTGCT-AC-TCTAG---ATAGGAT 318
consensus_5888#0 AACCCTTTTACCCCCACACACACTAACTCTTCTCTCGCTCGTTCTCGTAAGCAAAAGAGT 777
* * *** * * * *** * * ** ** * * ** * ** *
consensus_5888#1 ACCCAGGAAGGNNTTGGGCGTGGANGTATTGTGCAACATGGTCACTCACAGGGTTACNGA 579
consensus_5888#2 ACCAAG--AGGTTTT-----TTTGTATATTGT-CAACATGGTCACTCACAG--TTACG-- 366
consensus_5888#0 ACCTCCCCACCCCCCG--CTCCTACCCCAGAAACGAAACAGCCAACGGTGGA-TTATTGA 834
*** * * * * * ** * ***
consensus_5888#1 ATTACGTTTGANTGATAATGAGTCACCAGAAGGATCCACGTGAGATCTCAAAGGGTCNTG 639
consensus_5888#2 ATTACGTT--GATGATA-TGA-TCAC--AGAAGATCCA-GT------------------- 400
consensus_5888#0 TTTCTGACT-TATGACGTTAA-TTGGATGAAGAAAACAAAGGATACGAAACACGAAAATG 892
** * *** * * * * * **
consensus_5888#1 ATCGTACNATTC------------------------------------------------ 651
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 GTTATTTTGTGAAAAGAAACACACACACAAACAACCAAACCAATGCGAAAAAAACGGAGA 952
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 ATGATGATGACGGAAAAACCATGAAACAAATGGAAATGGATAACAAAAAGCAAGTAGAGA 1012
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 GAGAGAGCACACTATAGTTTAGTAGCGGAATAGATTTGTTGATGACAACAACAGACACTC 1072
consensus_5888#1 ------------------------------------------------------------
consensus_5888#2 ------------------------------------------------------------
consensus_5888#0 ACACAGAGGTAGAAGAACTGATAAATGAGGTGTAGCAAAAATAGAATACAAATTGGATGT 1132
consensus_5888#1 ------------------------------------------
consensus_5888#2 ------------------------------------------
consensus_5888#0 TGTGGTTGTTTTTTTTAATAGAAAACGTTAGAAGTGACAAGC 1174
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||