These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [ACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGTTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACGCGCTTCATTGACAAGCTGGACCACGCGAACATTGAGAAGAACAAGCAGCACCACATCGAGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGGTGCAGTTCATCACGTCCAAGATCGGTTCGCTCAGCGGCAGCTTCCTGGGCGGCTCGTCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCCCAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCGTCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAGTAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG] [+] EMBL BX626027 [ACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGTTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACGCGCTTCATTGACAAGCTGGACCACGCGAACATTGAGAAGAACAAGCAGCACCACATCGAGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGGTGCAGTTCATCACGTCCAAGATCGGTTCGCTCAGCGGCAGCTTCCTGGGCGGCTCGTCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCCCAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCGTCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAGTAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG] [+] EMBL BM629822 [ ccgGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACG ] consensusID : consensus_5896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGCACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAACGAATCT] [+] EMBL BX621343 [GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGCACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAACGAATCT] consensusID : consensus_5896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTTGTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCA] [+] EMBL BX622937 [CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTTGTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5896#1 -----------------GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACAC----- 38 consensus_5896#2 CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTT 60 consensus_5896#0 ----------------------ACTTGCATCTGCGCAGTGTAGCGTCGCAGACAC----- 33 *** ** * ** ** * * consensus_5896#1 GGCTGCCATAGTACACCGC----CCGATCGACGCAACCA-TCGCAATCCACGAGCCCCAG 93 consensus_5896#2 GTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAG 120 consensus_5896#0 GGTTGCCATAGTACACCGC----CCGATCGACGCAACCA-TCGCAATCCACGAGCCCCAG 88 * * * * ** * ** ***** * * * ** * ****** * * ** consensus_5896#1 GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 153 consensus_5896#2 GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 180 consensus_5896#0 GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 148 ************************************************************ consensus_5896#1 CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 213 consensus_5896#2 CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 240 consensus_5896#0 CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 208 ************************************************************ consensus_5896#1 CT--GCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 271 consensus_5896#2 CTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 300 consensus_5896#0 CTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 268 ** ******************************************************** consensus_5896#1 GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCC 331 consensus_5896#2 GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGG----------- 349 consensus_5896#0 GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCC 328 ************************************************* consensus_5896#1 ATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAG 391 consensus_5896#2 ------------------------------------------------------------ consensus_5896#0 ATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAG 388 consensus_5896#1 AACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGAC 451 consensus_5896#2 ----------------------------CTAGCAAGCAGTCAGCCCAGGCGGTCAAAGAC 381 consensus_5896#0 AACGCCATCCTAGGATTCGTGTTT----GGAAAAATCAACTCGTTCATCGACGCGAAGAC 444 * ** ** * ** * ***** consensus_5896#1 GCCATCCACC--CGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCG 509 consensus_5896#2 GCCATCCACC--CGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCG 439 consensus_5896#0 GCGCTTCATTGACAAGCTGGACCACGCGAACATTGA-GAAGAACAAGCAGCACCACATCG 503 ** * ** * * * * ** ** * * * ** * ** * ** * ** *** consensus_5896#1 ATCGGCAGAAGGTGTCCCTCCAGGTGCCG--GATGAGCT-GTTCGGCAGCTCGTTTACCC 566 consensus_5896#2 ATCGGCAGAAGGTGTCCCTCCAGGTGCCG--GATGAGCT-GTTCGGCAGCTCGTTTACCC 496 consensus_5896#0 AGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGG 563 * * ** **** * * * * * * * * *** ** ** ** ** * ** * consensus_5896#1 TGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTG 626 consensus_5896#2 TGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTG 556 consensus_5896#0 TGCAGTTCATCACGTCCAAG---ATCGGTTCGCTCAGCGGCAGC-TTCCTGGGCGGCTCG 619 ** * * ** ** * ***** **** * *** * * *** * consensus_5896#1 GCGAATTTTTCTGGGTGTTCCAGCCCCTGTT-CGGCAAGCACCTCA-CGATCGAGATCCC 684 consensus_5896#2 GCGAATTTTTCTGGGTGTTCCAGCCCCTGTT-CGGCAAGCACCTCA-CGATCGAGATCCC 614 consensus_5896#0 TCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCC 679 * ** * * * * * ****** * * * * * *** consensus_5896#1 GACGACGACGACGACGAC--GACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGC 742 consensus_5896#2 GACGACGACGACGACGAC--GACGACGCCGCGTACGACCA-------------------- 652 consensus_5896#0 CAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCG 739 * ** * ** ** * * ** ** * * ** consensus_5896#1 ACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAAC 802 consensus_5896#2 ------------------------------------------------------------ consensus_5896#0 TCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAG 799 consensus_5896#1 GAATCT-------------------------------------------- 808 consensus_5896#2 -------------------------------------------------- consensus_5896#0 TAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG 849 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||