These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1213 fasta sequence [CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAACTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATACTGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAGAAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACATCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGTGTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAGCGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGAACAAACAGAAACACAAAATCAAAACCTTCAAAATGCAAGTTAAAAAAAACAGGCGAAGAAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAAAAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAAACCAAAACCGAAATCAATCAACTCGGCAATTTAGCGGAATGGTGTAAATCCTGCGTGGCTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTGTGCGTGCATGGGAATGCGTAATGAAGGCAGTAAAAGGATAAACGTCTACGGTATGCGTGCGTGCTCTTACACTAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTTGCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGTTTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATTGTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCAAAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAAGTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAAACCTACTGCCAATAGAACCAA] [+] EMBL BM631631 [CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAACTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATACTGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAGAAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACATCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGTGTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAGCGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGAACAAACAGAAACACAAAATCAAAACCTTCAAAATGCAAGTTAAAAAAAACAGGCGAAGAAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAAAAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAAACCAAAACCGAAATCAATCAACTCGGCAATTTAGCGGAATGGTGTAAATCCTGCGTGGCTGTATGGGC ] [+] EMBL BM636697 [ ccgCGGCAATTTAGCGGAACGGTGTAAATCGTGCGTGGCTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTGTGCGTGCATGGGAATGCGTAATGAAGGCAGTAAAAGGATAAACGTCTACGGTATGCGTGCGTGCTCTTACACTAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTTGCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGTTTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATTGTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCAAAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAAGTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAAACCTACTGCCAATAGAACCAA] [+] EMBL BX625661 [ GTCTNCGGTATGCGTGCGTGCTCTTACACTANCCTACCTATCANCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCNTCATCTTGCTATCCTTTANAATTGCGAATGTGATCTAAA ] consensusID : consensus_5902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [GTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGAAAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACGGAAGGATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAACCAATGGACAAAACGAACATAACCGCCTAAATAATAAGTGACGAGAAGCTTTCCCTCTCGTCCAGAATGGGGCAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACGACGCGTTTGGGCAGCAAAAATAGCAAATATTAATGTAGCTTTCCTTTCTGTCCCTAGCGATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTAGTGTAGTTTTGGTAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTGGAAGCTTTTGGTTTGAACGTGTTTCTCTATACTGAAATGATTGTTTTTCCCTTTTACCCTCCCTTTTTTCTTTTATTT] [+] EMBL BX620603 [GTACGTAGCAAAATGGCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGAAAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACGGAAGGATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAACCAATGGACAAAACGAACATAACCGCCTAAATAATAAGTGACGAGAAGCTTTCCCTCTCGTCCAGAATGGGGCAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACGACGCGTTTGGGCAGCAAAAATAGCAAATATTAATGTAGCTTTCCTTTCTGTCCCTAGCGATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTAGTGTAGTTTTGGTAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTGGAAGCTTTTGGTTTGAACGTGTTTCTCTATACTGAAATGATTGTTTTTCCCTTTTACCCTCCCTTTTTTCTTTTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5902#0 CCGGAAGAGCAGGGCGCAAGGAAGATACAGAAATCATTAATCATTTAAACGCTGAACAAA 60 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 CTCATAACATACACATAAGATTATTGAAATCAATAGCGGACACCCGCGATGCCTCGATAC 120 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 TGAACGGCGTAGTAGGGTGATTTGCATCAATCGTATTTTAGTCGAAATATACAAAACAAG 180 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 AAAACGCGATTTAACGGTTAAGGCTTTAGTTTTTTAAAAACAAACAGGTATAACAAAACA 240 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 TCCCCCACACTTTAAGCAGACACAACCGGCAACCCGGCTATGCTGTGTGTATGTGTGTGT 300 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 GTGTGTGAGAGAGTGCGTGGAAGATGCGATAAGTGAAACAAGGGAATGCAAGTGATTGAG 360 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 CGTGATCGTGATAGATGATAAGGACTCAAATTACTGTGACATTGGATCGAGTAGCAAAGA 420 consensus_5902#1 ---GTACGTAGCAAA--ATG-GCGCATGGGTTGCAATGGAAGCATGAGAGAGATGAGAGA 54 * *** * * ** * * ** * ** * * * *** consensus_5902#0 ACAAACAGAAACACAAAATCAAAACCTTCAA--AATGCAAGTTAAAAAAAACAGGCGAAG 478 consensus_5902#1 AAAAAAAAACAAACAAAACAAAAACCTACTGCCAATAGAACCAATACAAAATACG-GAAG 113 * *** * * * ****** ******* * *** ** * * **** * * **** consensus_5902#0 AAGGTATTTCCTTTCGCACCCATCCAAAAAGAAAAGAGAAAAACTAAAGAAGAAGACTAA 538 consensus_5902#1 GATTAAGTGAACTGGAGAACCACACGAAGCAGAAACATAAAA-CCAATGGACAAAACGAA 172 * * * * * *** * ** *** * **** * ** * * ** ** ** consensus_5902#0 AAAAGTAATCGAAAAGATATAAAAAACAGGAAACAAAAACAGAACAAAACTAAACTGAAA 598 consensus_5902#1 CATAACCGCCTAAATAAT--AAGTGACGAGAAGCTTTCCCT---CTCGTCCAGAATGGGG 227 * * * *** ** ** ** *** * * * * * * ** consensus_5902#0 ACCAAAACCGAAATCAATCAACTCGGC--AATTTAGCGGAATGGTGTAAATCCTGCGTGG 656 consensus_5902#1 CAGGCGGGTTCGATCAATCGAAGCGATCGGATTCGCTCCCACCCGGCGCATCGTACGACG 287 ******* * ** *** * * *** * ** * consensus_5902#0 CTGTATGGGCGTGTGAGTGCTTGTGCAATATGTCTGTGTGTTTG---TGCGTGCATGGGA 713 consensus_5902#1 ACGCGTTTGGGCAGCAAAAATAGCA-AATATTAATGTAGCTTTCCTTTCTGTCCCTAGCG 346 * * * * * * * ***** *** *** * ** * * * consensus_5902#0 ATGCGTAATGAAGGCAGTAAAAGGATAAACGTC-TACGGTATGCGTGCGTGCTCTTACAC 772 consensus_5902#1 ATAATATGCAAAGGCTTCGAGCGAATGCGCCTGATGCACATTGCGTA-GTGTAGTTTTGG 405 ** ***** * * ** * * * * ***** *** ** consensus_5902#0 TAACCTTCTTATCAGCTCCTAAATTTTCGTTTTGGGTGAAACTGTTGTGTCCATCATCTT 832 consensus_5902#1 TAGCCAATTCTGTAACCTTCAAAGTGATCTCTTGTG-GAAGCTTTTGGTTTGAACGTGTT 464 ** ** * * * *** * * *** * *** ** *** * * * * ** consensus_5902#0 GCTATCCTTTAAAATTGCGAATGTGATCTAAATTCTTTCAAATGGGTTAAAACGTCATGT 892 consensus_5902#1 TCTCTATACTGAAAT---GATTGTTTTTC----CCTTTTACCCTCCCTTTTTTCTTTTAT 517 ** * * **** ** *** * **** * * * * * consensus_5902#0 TTTGGAAAGGGGAAGCGTGAAAACAATTGAATAATTACAACAAAAAAATACAAAAAAATT 952 consensus_5902#1 TT---------------------------------------------------------- 519 ** consensus_5902#0 GTGAAAAATCGCCGGCCGTGTCAGCTGCCCCTATAAAACAAGAAGAGCAGTAAATTTCCA 1012 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 AAAAGTATGAGCACATTGTCAGCAACGTTAATTTCCTTAAGTTCACGATAGCCTAACAAA 1072 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 GTATCAGAACAAAAAAAAAACGAAACATTCAAACAGTACGTAGCAAAATGGCGCATGGGT 1132 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 TGCAATGGAAGCATGAGAGAGACGAGAGAAAATGAAAAAAAAAAACAAAACAAAACAAAA 1192 consensus_5902#1 ------------------------------------------------------------ consensus_5902#0 ACCTACTGCCAATAGAACCAA 1213 consensus_5902#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||