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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[AGAATCGGCACGAGGTATAGGAGCAACGCGACAAGCCTTNCAAGATGTACAAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGATGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGGACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGATNTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTACTACGACGCGTCCCTGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTTAGTTTCAATTGTCCCTAG]
[+] EMBL BX469677 [AGAATCGGCACGAGGTATAGGAGCAACGCGACAAGCCTTNCAAGATGTACAAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGATGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGGACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGATNTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTA ]
[+] EMBL BX622388 [ GTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCA GGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGT CGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCA GGGCTAGAAGCACCGAGTGAACCGAGAGAAC AGATGATGATGATGATGATGATGCA GCAAGCA GTTT GTA C ATAGCTTCAACC GACCGCGTTGGACTCGCC TCA CCT AATCCCCC GTCT CC C CCCACAACA CTCCTC CC AT TGCCCCCATTGCCTCACCTTG TGCA GGACAC GC AGCCGTACTACGACGCGTCCCTGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTTAGTTTCAATTGTCCCTAG]
consensusID : consensus_5904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence
[AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCAGGGCTAGAAGCACCGAGTGAACCGAGAGAACAGATGATGATGATGATGATGATGCAGCAAGCAGTTTGTACATAGCTTCNACCGACCGCGTTGGACTCGCCTCACCTAATCCCCCGTCTCCCCCCACAACACTCCTCCCATTGNCCCCATTGCCTCACCTTGTGCAGG]
[+] EMBL BX627916 [AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCAGGGCTAGAAGCACCGAGTGAACCGAGAGAACAGATGATGATGATGATGATGATGCAGCAAGCAGTTTGTACATAGCTTCNACCGACCGCGTTGGACTCGCCTCACCTAATCCCCCGTCTCCCCCCACAACACTCCTCCCATTGNCCCCATTGCCTCACCTTGTGCAGG]
[+] EMBL BX619117 [ GAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTNCGATCTGNCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCCCCCAGGGCTAGAAGCCCCGAGTGAACCGAGAGAACAGATGATGATGATGAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5904#0 ----AGAATCGGCACGAGGTATAGGAGC-AACGCGACAAGCCTTNCAAGATGTACAAAAC 55
consensus_5904#1 AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTG-AAGATGTACAAA-C 58
* ** * * ****** *************** ************ *
consensus_5904#0 AATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGC 115
consensus_5904#1 AATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGC 118
************************************************************
consensus_5904#0 TCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGAC 175
consensus_5904#1 TCACCAAACGCTCGCCGCAGGG-CGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGAC 177
********************** *************************************
consensus_5904#0 CAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAG 235
consensus_5904#1 CAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAG 237
************************************************************
consensus_5904#0 GCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCC 295
consensus_5904#1 GCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCC 297
************************************************************
consensus_5904#0 GACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGG 355
consensus_5904#1 GACGGTACCTCGTACTCGGTCGTGTACGT-CGCGGACGAGAACGGATTCCAGCCGCAGGG 356
***************************** ******************************
consensus_5904#0 CGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCT 415
consensus_5904#1 CGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCT 416
************************************************************
consensus_5904#0 GCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGC 475
consensus_5904#1 GCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGC 476
************************************************************
consensus_5904#0 CCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGA 535
consensus_5904#1 CCGGCTTCGCGCCACCCAGGG-CTAGAAGCACCGAGTGAACCGAGAGAACA-GATGATGA 534
************** ****** ***************************** ********
consensus_5904#0 TGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGG 595
consensus_5904#1 TGATGATGATGATGCAG-CAAGCAG--TTTGTAC--ATAGCTTCNACCG-ACCGCGTTGG 588
***************** ******* ** *** ******** **** **********
consensus_5904#0 ACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGAT 655
consensus_5904#1 ACTCGCC-TCACCT--AATCCCCCGTCTCCCCCCAC--------AACACTCCTCCCA--- 634
******* *** * ********* ** * ** ****** *
consensus_5904#0 NTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTACTACGACGCGTCCC 715
consensus_5904#1 TTGNCCCCATTGCCTCACCTTG--TGCAGG------------------------------ 662
** * * ** * ********* ******
consensus_5904#0 TGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTT 775
consensus_5904#1 ------------------------------------------------------------
consensus_5904#0 AGTTTCAATTGTCCCTAG 793
consensus_5904#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||