These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCTTTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCCGAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAATCCCACTTGATATCAAGGCGGGGGTGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCGCGCTCTGTATGGTTGTGTAAAACAGGCGGACATTTATGAAAATCTGAAAACAACTTCCGGAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTCGTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGAAATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA] [+] EMBL AL929774 [ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCTTTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCCGAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAATCCCACTTGATATCAAGGCGGGGGTGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCGCGCTCTGTATGGTTGTGTAAAACAGGCGGACATTTATGAAAATCTGAAAACAACTTCCGGAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTCGTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGAAATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA] consensusID : consensus_5907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCAAGGATGGCAAGGTCATCAAGAACAGCGCTGCCACCGAGTACGATCTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTCGTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGTGC] [+] EMBL BM644464 [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCAAGGATGGCAAGGTCATCAAGAACAGCGCTGCCACCGAGTACGATCTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTCGTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGTGC] consensusID : consensus_5907#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCAAAGGTCTCATTTGCCGCTCTGACTCGCATCCAAGCAGCCGACGACCTGGGCCAACATGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCACTTCCAGGTACTGCTCGGTGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCTTCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCTGATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCACCTTTTCCGCACCATCT] [+] EMBL CNS09ERY [ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCAAAGGTCTCATTTGCCGCTCTGACTCGCATCCAAGCAGCCGACGACCTGGGCCAACATGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCACTTCCAGGTACTGCTCGGTGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCTTCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCTGATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCACCTTTTCCGCACCATCT] consensusID : consensus_5907#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [GAATATCACCCTGCTTGAACGTGGCCTGATACTGCCAGTATTAACTGTCCGGCCGGTTCGTCTCGACGATGCCGCCGACCCGGTCCACCTTGCAGTGCAGTCGGCCGGCGGAAATGAAGCGCGACAACTCGGTATCGACGTTGCCACGCTCACGCCGAACGCG] [+] EMBL CNS094T4 [GAATATCACCCTGCTTGAACGTGGCCTGATACTGCCAGTATTAACTGTCCGGCCGGTTCGTCTCGACGATGCCGCCGACCCGGTCCACCTTGCAGTGCAGTCGGCCGGCGGAAATGAAGCGCGACAACTCGGTATCGACGTTGCCACGCTCACGCCGAACGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5907#2 ------------------------------------------------------------ consensus_5907#3 ------------------------------------------------------------ consensus_5907#1 ---------------------------------------------------------CCG 3 consensus_5907#0 ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCT 60 consensus_5907#2 ------------------ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCA 42 consensus_5907#3 ------------------------GAATATCACCCTGCTTGAACGTGGCCTGATACTGCC 36 consensus_5907#1 CCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCA 63 consensus_5907#0 TTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCC 120 * consensus_5907#2 AAGGTCTCATTTGCCGCTCTGACTCGCAT----CCAAGCAGCCGACGACCTGGGCCAACA 98 consensus_5907#3 A--GTATTAACTGTCCGGCCGGTTCGTCT----CGACGATGCCGCCGACCCGGTCCACCT 90 consensus_5907#1 AGGATGGCAAG-GTCATCAAGAACAGCGC----TGCCACCGAGTACGATCTGACCGACAA 118 consensus_5907#0 GAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAA 180 * * * * * * consensus_5907#2 TGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCA------CTTCCAGGTACTGCTCGG 152 consensus_5907#3 TGCAGTGCAGTCGGCCGGCGGAAA--TGAAGCGCGA------CAACTCGGTA----TCGA 138 consensus_5907#1 GTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCAT 178 consensus_5907#0 TCCCACTTGATATCAAGGCGGGGG--TGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCG 238 * * * * ** consensus_5907#2 TGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCT 212 consensus_5907#3 CGT----TGCCA---CGCTCAC---GCCGAACGCG------------------------- 163 consensus_5907#1 GATCAAGGGTTGCTGCATCGGT---GCCAAGCGT-CGCGTAATCACGCTGCGCAAATCGC 234 consensus_5907#0 CGCTCTGTATGGTTGTGTAAAACA-GGCGGACATTTATGAAAATCTGAAAACAACTTCCG 297 * consensus_5907#2 TCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCT 272 consensus_5907#3 ------------------------------------------------------------ consensus_5907#1 TGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTC 294 consensus_5907#0 GAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTC 357 consensus_5907#2 GATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCA 332 consensus_5907#3 ------------------------------------------------------------ consensus_5907#1 GTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGT 354 consensus_5907#0 GTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGA 417 consensus_5907#2 CCTTTTCCGCACCATCT------------------------------ 349 consensus_5907#3 ----------------------------------------------- consensus_5907#1 GC--------------------------------------------- 356 consensus_5907#0 AATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA 464 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||