These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [GATCGCCCGAGGTTGTCACCGCCGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGATAGAAAACGACGTGTACCACCAAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCAAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAACGTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTTTTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACGGCTGGCGCGCAT] [+] EMBL AL930055 [GATCGCCCGAGGTTGTCACCGCCGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGATAGAAAACGACGTGTACCACCAAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCAAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCG ] [+] EMBL BX606558 [ ACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAACGTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTTTTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACGGCTGGCGCGCAT] consensusID : consensus_5914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAAAAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG] [+] EMBL CNS08ZXK [TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAAAAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG] consensusID : consensus_5914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTG] [+] EMBL BM586670 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5914#0 ----------GATCGCCCGAGGTT---GTCA-CCGCCGATTGGAGCAGCAGCAGCAGCAG 46 consensus_5914#2 CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAG 60 consensus_5914#1 --------TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGG 52 * ** * ** * * * * * * consensus_5914#0 CGGCAGAGAAGCAAGCGCGCACCTTTATCCGC----AACATCTGTTGTGTTGCGCATTTC 102 consensus_5914#2 CGGCAGAGAAGCAAGCGCGCACCTTTATCCGC----AACATCTGTTGTGTTGCGCATTTC 116 consensus_5914#1 GCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTT 112 * * * * * ***** * * * ** ** ** ** consensus_5914#0 GCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTG-GTCTGGTATCCG 161 consensus_5914#2 GCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTG-GTCTGGTATCCG 175 consensus_5914#1 GC-TGT-TGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACG 170 ** *** *** ** *** * * ***** * * ** * ** * * * ** consensus_5914#0 TTCCCAGGATACAGC-ACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTA 220 consensus_5914#2 TTCCCAGGATACAGC-ACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAG-----TA 229 consensus_5914#1 CTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAA--AACA 228 ** * * ** **** ** * * * ** * * * * consensus_5914#0 GGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGAT 280 consensus_5914#2 GGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGAT 289 consensus_5914#1 AACAAACATAACAAAGCTATCTACAGTGAAAAATAG-AAGCGACGTAAGAGATAACACAC 287 * * ** * * * * * ** ** ** * consensus_5914#0 AGAAAACGACGTGTACCACCA------AGGGCGTAAAATATACTAAAACCGAA-GAAAGA 333 consensus_5914#2 AGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAA-GAAAGA 348 consensus_5914#1 ACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGA 347 * ** ** * * * * * * * * * * * * * **** consensus_5914#0 TGGCCCCAAACGCAACGGTGGAGGC-AACCGGTGTGCTGAA-----------CGAGCTGG 381 consensus_5914#2 TGGCCCCTAACGCAACGGTGGAGGC-AACCGGTGTGCTGAA-----------CGAGCTGG 396 consensus_5914#1 CGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCG 407 * * * * ** * * * *** ** ** * * * **** * * consensus_5914#0 ACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGT-GACGCCGCTGAAGCGTGCCGAG 440 consensus_5914#2 ACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGT-GACGCCGCTGAAGCGTGCCGAG 455 consensus_5914#1 ACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTG 467 ** * *** ** *** ** * ** ** * * * ** * * consensus_5914#0 AAGCGCAAGATCAAGCTGGTCTGGAGA-AATGTGATTGCC-------TTCGGTTACCTTC 492 consensus_5914#2 AAGCGCAAGATCAAGCTGGTCTGGAGA-AATGTGATTGCC-------TTCGGTTACCTTC 507 consensus_5914#1 ACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCG 527 * ** * * * * * *** * * * *** * * * * consensus_5914#0 ATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCG-GCTCTACACCATC 551 consensus_5914#2 ATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCG-GCTCTACACCATC 566 consensus_5914#1 ATCTGGCGATCGTCGATGTGGA--TGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAA 585 ******* *** * * * * ***** *** ** * ** * * consensus_5914#0 GCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAAC 611 consensus_5914#2 GCGTTCGC--ATTCGTG-TTGTACGTCGTG------------------------------ 593 consensus_5914#1 AAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG- 644 * * * consensus_5914#0 GTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTT 671 consensus_5914#2 ------------------------------------------------------------ consensus_5914#1 ------------------------------------------------------------ consensus_5914#0 TTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACG 731 consensus_5914#2 ------------------------------------------------------------ consensus_5914#1 ------------------------------------------------------------ consensus_5914#0 GCTGGCGCGCAT 743 consensus_5914#2 ------------ consensus_5914#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||