These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGTACTCGGTCTGGATCGGTGGCTCCATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTGGGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGCGCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGCATCGTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGCCATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGATATGTATTTCGTTGCCAAAATTCGATTCCATCCGAAGGAACACACCAAGTTGCTAGAAAAGGAAGGTACTGACGTATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCTTTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTCGACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACTCTTATTTTAAT] [+] EMBL BM611457 [CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGTACTCGGTCTGGATCGGTGGCTCCATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAGTCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTGGGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGCGCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGCATCGTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGCCATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGATATGTATTTCGTTGCCAAAATTCGATTCCATCCGAAGGAACACACCAAGTTGCTAGAAAAGGAAGGTACTGACGTATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCTTTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTCGACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACTCTTATTTTAAT] consensusID : consensus_5918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCGCCCACGCGTCCGGAAGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCGACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTGCCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTGCGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTCTGTGTGCTTAGGGTTTGTGTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGTGTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGTGTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCAGAGTCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTGCGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG] [+] EMBL BM602815 [CCGCCCACGCGTCCGGAAGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCGACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTGCCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTGCGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTCTGTGTGCTTAGGGTTTGTGTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGTGTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGTGTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCAGAGTCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTGCGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG] consensusID : consensus_5918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence [CCGCCCACGCGTCCG---GAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGCCTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGCGGGTTGAGCGGTACCCGGGGTTGAAGCAGGGACTGCGCCCCGACACCCCCCCCCCCCCCCCGAGGACTGGCCAGCTCCATGGCTCGCATAAACGAACGCAGGCTAAA] [+] EMBL BM602426 [CCGCCCACGCGTCCG GAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGCCTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGCGGGTTGAGCGGTACCCGGGGTTGAAGCAGGGACTGCGCCCCGACACCCCCCCCCCCCCCCCGAGGACTGGCCAGCTCCATGGCTCGCATAAACGAACGCAGGCTAAA] [+] EMBL BM576565 [CCGCCCACGCGTCCGGAAGAAACCGCAAATGGCTCCACCGACGATCGGCAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGCCAGACAGTAGTGCAGCGCCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACGGCCACGTGATGCCTGCGAAGCCTGGGACTGCTGCGCGAGTTCTACCGTCGTCGATGGCTGCCCATCTTGCGATGTCCGACCTACGGCGAATTCCGATCCGATGATACCTGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5918#1 CCGCCCACGCGTCCGGA---AGAAGGTCGCGTTTTAACTGGTGTGTTCCGACTCGATCCG 57 consensus_5918#2 CCGCCCACGCGTCCGGA---A----ACCGC-----AAATGGC-TCCACCGAC--GATCGG 45 consensus_5918#0 CCGCCCACGCGTCCGGCCCCACCGGAGCGCAAGT-ACTCGGTCTGGATCGGT--GGCTCC 57 **************** * *** * ** * ** * consensus_5918#1 ACCACAGCCCTTCCCTTCCGGTTGCAGGACTGGTTCGCCCCTCAGCGCGCACAGTTTGTG 117 consensus_5918#2 --CAGAACGGTATTGGCTGAACAACAACATCTCCCCCCCTGACAGC-CAGACAGTA-GTG 101 consensus_5918#0 ATCCTGGCGTCCCTGTCCACCTTCCAGCAGATGTGGATCTCCAAGCAGGAGTACGACGAG 117 * * ** * * *** * * * consensus_5918#1 CCGTGACCGTGAGCGTCCCGTTGTGCGTGTGTGTGTGCGGTGTGTCGCGGCTTTCGTGTG 177 consensus_5918#2 CAGCG-CCTCCAATTCTCCTCCGTGCTGCCGTGTGCCTGACG-GCCACG----TGATGCC 155 consensus_5918#0 TCTGGCCCAGGCATTGTCCACCGCAAGTGCTTCTAAGCTAGCAGAGTCATCGGAGCCGTG 177 * ** ** * * * * * * consensus_5918#1 CGCGTGTACGGTGCGCACTGGCGTGAGTGTGTGCGTGCAGCAGCGCCCTGTGTC--TGTG 235 consensus_5918#2 TGCGAAGCCTGGGACTGCTG-CGCGAGTTCTACCGTCGTCGATGGCTGCCCATC--TTGC 212 consensus_5918#0 GGATAACGGGGTGTAGCCTGAATTGATGAGGGACATTAATTGGAGGCAAACACTAACAGC 237 * * * *** ** * * * consensus_5918#1 TGCTTAGGGTTTGT---GTGCCGGATAGCAGCCGGAGTGACCCACTGTTAGTGGGTGTGT 292 consensus_5918#2 GATGTCCGACCTAC---G-GCGAATTCCGATCCGATGATACCTGCCTATCCACGGGATGC 268 consensus_5918#0 GCTACACAAATTACCAGACACACATACAGACACAGAGGTAGTCGTTAAGCATTAGTGCGC 297 * * * * * * * * consensus_5918#1 GTGTGTGCTTTAGTGAGTGGGTGTGTGTGTGCGATTTGCACACATCTACACTTCCTTCGT 352 consensus_5918#2 CTCTGTGTTTGTGTAGTGTGGGGTCCCCCTTCGTTTTCCCCCTGTTCCCCCCCCTTTCGC 328 consensus_5918#0 ATC-GTGTTGCACGAGGCCTTACCCCCAACACGAACCCTTCTAGGCCAAGCCAAATGC-C 355 * *** * ** * * * * consensus_5918#1 GTGCGGGTCTGTGTGCGTGTGTGGCTGTTAGTGCCACCCACCCTCAGCAGAGCA---GAG 409 consensus_5918#2 GGGTTGAGCGGTACCCGGG-GTTGAAGCAGGGACTGCGCCCCGACACC------------ 375 consensus_5918#0 ATCTTCCAGAATCTCCAAGAATTCTCGAACCCCTCCCACACTTTCACCCTAGTCATTGAT 415 * * * * * * * * ** * consensus_5918#1 TCGTCTCCCTCCTGCGATACTTGCGGGAGGTTGGAAAAGCCAAGCACCAAATCAGCGTTG 469 consensus_5918#2 -CCCCCCCCCCCCCCGAGGACTG-GCCAGCTCC---ATGGCTCGCAT-AAACGAACGCAG 429 consensus_5918#0 ATGTATTTCGTTGCCAAAATTCGATTCCATCCG---AAGGAACACACCAAGTTGCTAGAA 472 * * * * * * ** ** consensus_5918#1 CGGAAAAGTCTTTCAGCCGAAGTATCCAATAGTCAAG----------------------- 506 consensus_5918#2 GCTAAA------------------------------------------------------ 435 consensus_5918#0 AAGGAAGGTACTGACGT-ATAGCATTCAAGAGGAGTGCAAACAGTGCGAAGACTGCCGCT 531 ** consensus_5918#1 ------------------------------------------------------------ consensus_5918#2 ------------------------------------------------------------ consensus_5918#0 TTTAACCGTGAAAAAGAAACACTGTTCGTGAGCGTGTGCCGGACACGGTATTATTTGTTC 591 consensus_5918#1 ------------------------------------------------------------ consensus_5918#2 ------------------------------------------------------------ consensus_5918#0 GACTTATCAAACTGGTATCTATTAATTAATGATCGTGCTCGAGGAGAGATAAATTATACT 651 consensus_5918#1 ----------- consensus_5918#2 ----------- consensus_5918#0 CTTATTTTAAT 662 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||