These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 942 fasta sequence [GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTTTATCACGTACTGCTGCATGTCGCTAGTGTCCAGTGGGGCGAGTGTGCTTGCCATGGCATACGGCTATCTGCTTTCCTGTACAACCGGCACCATGAACATGGCGATCGAGACGAGCAACATCATCTTTTTGGCGTTTATGCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCCTTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAGGGTGTCTCCGTGTACTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAAACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCTCGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCGGTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGGGGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAAAAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGNTTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC] [+] EMBL BX467753 [GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTTTATCACGTACTGCTGCATGTCGCTAGTGTCCAGTGGGGCGAGTGTGCTTGCCATGGCATACGGCTATCTGCTTTCCTGTACAACCGGCACCATGAACATGGCGATCGAGACGAGCAACATCATCTTTTTGGCGTTTATGCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCCTTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAGGGTGTCTCCGTGTACTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAAACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCTCGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCGGTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGGGGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAAAAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGNTTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC] consensusID : consensus_592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [AGGTGTTTCATTGCTTCAGCGATGTGATCCTGATGCAAGATGGCGGGACCGTCTTCTACCAGGGACCAACGGCCGATCGGATAGACTTTTTCAACTCCATTGGCAAGGAGGTGCCGGCGAATGGCAATCCGGCCGATTTTTACTTCCAGCTCGTCAGTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGTACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGATACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCGAAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAATATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCTTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACGGACTTTGCCACGTAC] [+] EMBL BX623059 [AGGTGTTTCATTGCTTCAGCGATGTGATCCTGATGCAAGATGGCGGGACCGTCTTCTACCAGGGACCAACGGCCGATCGGATAGACTTTTTCAACTCCATTGGCAAGGAGGTGCCGGCGAATGGCAATCCGGCCGATTTTTACTTCCAGCTCGTCAGTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGTACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGATACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCGAAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAATATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCTTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACGGACTTTGCCACGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_592#0 GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCAT 60 consensus_592#1 ------------------------------------------------------------ consensus_592#0 CCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTA 120 consensus_592#1 ------------------------------------------------------------ consensus_592#0 CGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAA 180 consensus_592#1 --AGGTGTTTCA-----TTGCTTCAGCGATG----TGATCCTGATGCAAGATGGCGGGAC 49 ****** * * ** * * **** ****** * * * ***** ** consensus_592#0 GAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTT 240 consensus_592#1 CGTCT-----TCTACCAGGGACCAACGGC---CGATCGGATAGACTTTTTCAACTCCATT 101 ** * *** * ** * * ** * * ** * * * * * * ** consensus_592#0 CCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTT 300 consensus_592#1 GGCAAGGAGGTGCCGGC------GAATGGCA-ATCCG---GCCGATTTTTACTTCCAGCT 151 * ** * * * **** ** ** * * **** * * consensus_592#0 TATCACGTACTGCTGC-ATGTCGCTAGTGTCCAGTGGGGC-GAGTGTGCTTGCCA-TGGC 357 consensus_592#1 CGTCA-GTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGT 210 *** ** * * *** * ** * * * ****** *** *** ** *** ** consensus_592#0 ATACGGCTATCTGCTTT-CCTGT--ACAACCGGCACCATGAACATGGCGATCGAGACGAG 414 consensus_592#1 ACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGA- 269 * * * ** ***** *** * * * ** * ** *** consensus_592#0 CAACATCATCTTTTTGGCGTTTAT--GCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCC 472 consensus_592#1 TACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCG 329 * ***** * * * * ** * *** * *** ** consensus_592#0 TTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAG-GGTGTCTCCGTGTA 531 consensus_592#1 AAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAA 389 * **** *** *** * * * * *** * * * ** * * consensus_592#0 CTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAA 591 consensus_592#1 TATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACT-- 447 ** ** ** * * * * * * * * ** *** ** consensus_592#0 ACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCT 651 consensus_592#1 ACGA-CGTGCGCCCAGT---TTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTT 503 **** * * * ** *** * * * * ** * *** ** * consensus_592#0 CGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCG 711 consensus_592#1 C-TGATGATA------AGCGAGCTAGTGTA----CACGATCAGTTACGG-TGTGTTTTAC 551 * * * ** * * * *** ** * * ** * *** * consensus_592#0 GTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGG 771 consensus_592#1 ACATTCCCTGCGGAGATGCCA----CTGATCCGCCGGGAGGTT--------GGCGAGAAG 599 * * * * * * *** ***** ** ** * *** ** * * consensus_592#0 GGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAA 831 consensus_592#1 AGC----TACACCCTTTCCATGTACTACCTGC---ACAAGGTGCTGTACAGTGT-GCCGA 651 ** * * * * ** ** ** * *** * * * * * * * * consensus_592#0 AAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGN 891 consensus_592#1 GAGCGTTC---TTTGAGTCGTTTCTGTTCATCG--GCGTGGCTTATGCGTTCGTTGGCTT 706 **** * ** ** * * *** ** * ** * * * * consensus_592#0 TTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC 942 consensus_592#1 TTCGACGGACTTTGCCACGTAC----------------------------- 728 ** * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||