cluster # 5923

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Anopheles gambiae
cluster # 5923 cluster # 5923 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5923#0 length = 1086 sequences # 2

consensus_5923#1 length = 629 sequences # 1
consensus_5923#2 length = 380 sequences # 1

consensusID : consensus_5923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1086
fasta sequence

                              [TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTAC-GAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTTCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAAACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTTATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGGTTCATGCCGGCGGGTCCATCGTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGATACACGTGCTGAATT]

[+] EMBL CNS08TGL             [TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCGTTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTAC GAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTTCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAAACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTTATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGG                                                                                              ]
[-] EMBL CNS08TGK             [                                                                                                                  TCGGCCAGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACCCGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCACGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGTGATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGACGAGCCGGTACGGAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCATGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGCGGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCGTGCCGATCTTCCAGTCCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTCCGGAATCTCGGTCTTGATCTGCTGCAAGATCGCAATGGAAAATGTAGCAGTCTTTCCGGTACCGGACTGAGCTTGTG GATTACATCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGACGGTTTCTCGAAACCGTATGCGTAAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTCATAAGACTCGCTATAGTTCGACTCGATGATGCCGTCTGGGTTCATGCCGGCGGGTCCATCGTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGATACACGTGCTGAATT]




>consensus_5923#0
TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCG
TTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCC
AGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACC
CGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCA
CGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGT
GATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGAC
GAGCCGGTACGAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCA
TGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGGC
GGGTGTTGCAGAATATGACCGCCTGCGTGATCGACAGCGTGTCGTACAGATCGCACAGCG
TGCCGATCTTCCAGTTCTCGTACTTCACGTCGACGTAGAACTGCCGGATACCTTCCAGGG
TCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGGGACACCT
CGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCCGGCAGCT
TCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGCAAGATCG
CAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACATCGCTTC
CTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAAACCGTATG
CGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTTATAAGACT
CGCTATAGTTCGACTCGATGATGCCGTTTGGGTTCATGCCGGCGGGTCCATCGTACGTCT
GCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGATACACGTGC
TGAATT

consensusID : consensus_5923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [AGCAGAATCGCCACGAGGTANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACGATTGCAATAATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCGCTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGTTGGTGGCGGCGGCTGCGACGGTGACCCGCGCCGAGGAGCAACCGAACCCCGTCACTGAAGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAGGAAGTACAGGCTAACAATCTAGGTGGCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCGACCACATCGAGCGCGTGCGTCTGGGATCTGGCTGGATCACGANAGTGGNAAGCATAGCCANACCTTCGAGATCCTAGTNTCGGCACNGTCCAGGTANTGGCGGAGCACCAATACACCGCTACGAGATNCANAGCCCCNAANNNGATAACCGAACCCAACNNCACNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACCACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN]

[+] EMBL AL697079             [AGCAGAATCGCCACGAGGTANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACGATTGCAATAATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCGCTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGTTGGTGGCGGCGGCTGCGACGGTGACCCGCGCCGAGGAGCAACCGAACCCCGTCACTGAAGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAGGAAGTACAGGCTAACAATCTAGGTGGCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCGACCACATCGAGCGCGTGCGTCTGGGATCTGGCTGGATCACGANAGTGGNAAGCATAGCCANACCTTCGAGATCCTAGTNTCGGCACNGTCCAGGTANTGGCGGAGCACCAATACACCGCTACGAGATNCANAGCCCCNAANNNGATAACCGAACCCAACNNCACNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACCACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN]




>consensus_5923#1
AGCAGAATCGCCACGAGGTANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGT
GCAAGAGGAAGCACGTACGATTGCAATAATACCGATTAATCAGTGTATTGCGATCTAGTA
AAGCCTTTTCGAAACCCGCTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAG
GGCTGCTGGTGGTAGTGTTGGTGGCGGCGGCTGCGACGGTGACCCGCGCCGAGGAGCAAC
CGAACCCCGTCACTGAAGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGA
GGAGGAAGTACAGGCTAACAATCTAGGTGGCCAGACTCGTCGGTGGTGCAACGCCCGTGG
ACGTGAAGGAACCGACCACATCGAGCGCGTGCGTCTGGGATCTGGCTGGATCACGANAGT
GGNAAGCATAGCCANACCTTCGAGATCCTAGTNTCGGCACNGTCCAGGTANTGGCGGAGC
ACCAATACACCGCTACGAGATNCANAGCCCCNAANNNGATAACCGAACCCAACNNCACNC
GTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACCACCCTCCCAG
CNNTATCCCNGGNCCCAGACCCCGCCCAN

consensusID : consensus_5923#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [CCGTACAAGTTTCAGATGTGTGCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGTGTGCGCAGGCGTTCAAGGTTCAATTGATCCTCAAGCACAAAGGTTCATACAACACCGCGGTTGAGGCGCGCCAAATTTGATGACATCTCCCCTCAGGCAAAAACCAAGCAGGCTGAACATGCGCACCACCAAACGGGCTCCAGCGCGGTGTGAAGAGAGAGGAAGAAGAGAAGACAGAATTGGAAACAGCCGCGCCAGTCTACCAACCACCGTGTGTGTGTATGTAAATATGTGAGAACACATGTGTGAATCCTCTTGTGGGAACTGCAAAAAGAAGAGAAATAAAGAGTGTGAAGCAGCTAGGCCACCGC]

[+] EMBL BM617716             [CCGTACAAGTTTCAGATGTGTGCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGTGTGCGCAGGCGTTCAAGGTTCAATTGATCCTCAAGCACAAAGGTTCATACAACACCGCGGTTGAGGCGCGCCAAATTTGATGACATCTCCCCTCAGGCAAAAACCAAGCAGGCTGAACATGCGCACCACCAAACGGGCTCCAGCGCGGTGTGAAGAGAGAGGAAGAAGAGAAGACAGAATTGGAAACAGCCGCGCCAGTCTACCAACCACCGTGTGTGTGTATGTAAATATGTGAGAACACATGTGTGAATCCTCTTGTGGGAACTGCAAAAAGAAGAGAAATAAAGAGTGTGAAGCAGCTAGGCCACCGC]




>consensus_5923#2
CCGTACAAGTTTCAGATGTGTGCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTG
CGACACTGTGTGCGCAGGCGTTCAAGGTTCAATTGATCCTCAAGCACAAAGGTTCATACA
ACACCGCGGTTGAGGCGCGCCAAATTTGATGACATCTCCCCTCAGGCAAAAACCAAGCAG
GCTGAACATGCGCACCACCAAACGGGCTCCAGCGCGGTGTGAAGAGAGAGGAAGAAGAGA
AGACAGAATTGGAAACAGCCGCGCCAGTCTACCAACCACCGTGTGTGTGTATGTAAATAT
GTGAGAACACATGTGTGAATCCTCTTGTGGGAACTGCAAAAAGAAGAGAAATAAAGAGTG
TGAAGCAGCTAGGCCACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      TTCGCGGCGCTGGCCTGCTGCTGCTGCTGCTGTTGTTATTTATCTTTGCTCGTTTCTTCG 60
                                                                                  

consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      TTTTTGAGGGGAAAGACAACAAAAATATTTCGCACTTCCGCAATTTAAATCATATCGGCC 120
                                                                                  

consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      AGATTGGCTGGCATTTCCTCGATGGTAGTGTTGTAATGCTTCTCGATATCGGCGAGAACC 180
                                                                                  

consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      CGCTTGTCCTGTTCGGTGACGAAGTTGATAGCAACTCCCTTACGACCGAAACGTCCACCA 240
                                                                                  

consensus_5923#1      -----------------------------------------AGCAGAATCGCCACGAGGT 19
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      CGTCCAATTCTATGAATGTAATTCTCCCGCAGCGTTGGAAGGTCATAATTAATAACTAGT 300
                                                                                  

consensus_5923#1      ANGATTTGTGCAGTGCTAACAAGTAGAGGGCGATAGACAGTGCAAGAGGAAGCACGTACG 79
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      GATACCTGCTGCACATCGATACCACGGGCGAGCAGATCCGTGGTGATCAGGACACGCGAC 360
                                                                                  

consensus_5923#1      ATTGCAATA-ATACCGATTAATCAGTGTATTGCGATCTAGTAAAGCCTTTTCGAAACCCG 138
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      GAGCCGGTACGAACTGCTTCATGATCAGATCGCGATCGCGCTGCTCCATGTCGCCGTGCA 420
                                                                                  

consensus_5923#1      CTAAAGGGGGGGGTGCAAGAATGCGTCCCATTCTGCAGCTAGGGCTGCTGGTGGTAGTGT 198
consensus_5923#2      ------------------------------------------------CCGTACAAGTTT 12
consensus_5923#0      -TGGCGGACACGGTGAACGTCTTCTCCGTCATCTGCTCGGTCAGCTGGTCGACCTTGCGG 479
                                                                        *     *   

consensus_5923#1      TGGTGGCGGC-GGCTGCGACGGTGACCCGCGCCGAGGAGCAAC-CGAACCCCGTCACTGA 256
consensus_5923#2      CAGATGTGT---GCTGTTACCGCTAGCTGTTCTCCAAACCTCTTCAAATTGCGACACTGT 69
consensus_5923#0      CGGGTGTTGCAGAATATGACCGCCTGC-GTGATCGACAGCGTGTCGTACAG-ATCGCACA 537
                        *  *        *   ** *    * *        * *    *  *      * *   

consensus_5923#1      AGCTGAAGTGACCTCGAACAGCAACGGCCCACGGAGGAACCGGAGGAG-GAAGTACAGGC 315
consensus_5923#2      GTGCGCAG-GCGTTCAAGGTTCAATTGATCCTCAAG----CACAAAGG-TTCATACAACA 123
consensus_5923#0      GCGTGCCG-ATCTTCCAGTTCTCGTACTTCACGTCGA---CGTAGAACTGCCGGATACCT 593
                          *  *     ** *            *     *    *  *          * *   

consensus_5923#1      TAACAATCTAGGTG-GCCAGACTCGTCGGTGGTGCAACGCCCGTGGACGTGAAGGAACCG 374
consensus_5923#2      CCGCGGTTGAGGCGCGCCAAATTTGATGA-----CATCTCCCCT---CAGGCAAAAACCA 175
consensus_5923#0      TCCAGGGTCAGCTCCTCCTTCTTCACCAGAATCTTGACCGGGTTGCGCATGAAGTGCTGG 653
                               **     **    *              *     *   *  * *       

consensus_5923#1      ACCACATCGAGCGCGTGCGTCTGGG----ATCTGGCTGGATCACGANAGTGGNAAGCATA 430
consensus_5923#2      AGCAGGCTGAACATGCGCACCACCA----AACGGGCTCCAGCGCGGT-GTGAAGAGAGAG 230
consensus_5923#0      GACACCTCGAGCACATCCGCCGGCATCGTAGCGGACAGCAGGATGACCTGCACGTCCGCC 713
                        **    ** *     *  *        * * * *   *    *               

consensus_5923#1      GCCANACCTTCGAG---ATCCTAGTNTCGGCA--CNGTCCAGGTANTGGCGGAGCACCAA 485
consensus_5923#2      GAAGAA-----GAG---AAGACAGAATTGGAA--ACAGCC-----GCGCCAGTCTACCAA 275
consensus_5923#0      GGCAGCTTCTGGAACACGTCCTGAATCTGGCAGTTCGGAATCTCGGTCTTGATCTGCTGC 773
                      *          **               ** *                        *   

consensus_5923#1      TACACCGCTACGAGATNCANAGC-------CCCNAANNNGATAAC-CGAACCCAACNNCA 537
consensus_5923#2      ----CCACCGTGTG-TGTGTATG-------TAAATATGTGAGAACACATGTGTGAATCCT 323
consensus_5923#0      AAGATCGCAATGGAAAATGTAGCAGTTTTTCCGGTACCGGACTGAGCTTGTGCGATTACA 833
                           * *   *        *              *   **     *       *   * 

consensus_5923#1      -------CNCGTCGTCACCAAGTCACCCGTCGCCCCAANCGNNCGAANNCCGCCNCNACC 590
consensus_5923#2      -------CTTGTGGGAACTGCAAAAAGAAGAGAAATAAA-GAGTGTGAAGCAGCTAGGCC 375
consensus_5923#0      TCGCTTCCTTTCACGCACGGCACAATGGCGCGCTGCTGGATGGCAGAGGGTTTCTCGAA- 892
                             *        **      *      *                     *      

consensus_5923#1      ACCCTCCCAGCNNTATCCCNGGNCCCAGACCCCGCCCAN--------------------- 629
consensus_5923#2      ACCGC------------------------------------------------------- 380
consensus_5923#0      ACCGTATGCGTTAATGCCGCGGAGGAGCTCCTCACGCAGACCCATCTGGTCGAAGTTGTT 952
                      ***                                                         

consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      ATAAGACTCGCTATAGTTCGACTCGATGATGCCGTTTGGGTTCATGCCGGCGGGTCCATC 1012
                                                                                  

consensus_5923#1      ------------------------------------------------------------
consensus_5923#2      ------------------------------------------------------------
consensus_5923#0      GTACGTCTGCTCCTGGCGGTTGTCATCCATGTTTTCACGATTGAAGTTTGGCACTTTGAT 1072
                                                                                  

consensus_5923#1      --------------
consensus_5923#2      --------------
consensus_5923#0      ACACGTGCTGAATT 1086