These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence [GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCTACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTAGAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAGTATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAGACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCGTACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG] [+] EMBL BX625987 [GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCTACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTAGAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAGTATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAGACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGGTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACNAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAA ] [+] EMBL BM638094 [ ccgGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCTTTTTGCTAGACGTCGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACAT ] [+] EMBL BM579019 [ ccgATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATAAATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACATATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAAACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCAGTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGCGTATGTAAGT GGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTTAAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGACATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCGTACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG] consensusID : consensus_5934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAGATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTAGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT] [+] EMBL BX612359 [AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAGATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTAGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT] consensusID : consensus_5934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CGACCCACGCGTCCGGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAGGCATACTAGCAAACAAACTAT] [+] EMBL BM639454 [CGACCCACGCGTCCGGTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTTACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTTGTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTAGAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAGGCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAAACGGAAGGAAGTGTTTAACACACACCGTTATTGTGCTGGTTGGAAAGCCATTAACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGTCGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTACTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGTATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAGAAAGGCATACTAGCAAACAAACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5934#1 AGTAAATAATGGAATATTAATACGAAGAAGAAGATAAGAAACAGATGCAATAAGCAAAAG 60 consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 ------------------------------------------------------------ consensus_5934#1 ATGTCCCTTGAAATGACAGTATTTATTGTAGAATAGAAATAACTAAATGCAAAGCAGCTA 120 consensus_5934#2 ---------------------------------------------CGACCCACGCGTCCG 15 consensus_5934#0 ------------------------------------------------------------ consensus_5934#1 GTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTT 180 consensus_5934#2 GTAGCAGTTGCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGTT 75 consensus_5934#0 ---------GCATTAGCGGAAAACAGAGAAAATCAAACCCAAAAACAGATACAAACAGCT 51 ************************************************* * consensus_5934#1 ACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTT 240 consensus_5934#2 ACTCAATCTTCTTCACACTTTTTCAGTACACACCACACATTGGCATGTTCTTAAACAGTT 135 consensus_5934#0 ACTCAATCTTCTTCACACTTTTTCAGTACACACCAGACATTGGCATGTTCTTAAACAGTT 111 *********************************** ************************ consensus_5934#1 GTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTA 300 consensus_5934#2 GTATCTAGATATAGATAGTTGCTAGCATGGGAGATAGGAAACCAAAAATCCAATTCACTA 195 consensus_5934#0 GTATCTAGATATAGATAGTTGCTAGCATGGGAGAAAGGAAACCAAAAATCCAATTCACTA 171 ********************************** ************************* consensus_5934#1 GAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAG 360 consensus_5934#2 GAACGTTGGATTGGTTCGATTAGAAGAAGGCAATTGTGCGATCGTTTGGCAGTAAGCTAG 255 consensus_5934#0 GAACGTTCGATTGGTTCGATTAGAAGAAGGCAATTCGGCGATCGTTTGACAGTAAG---- 227 ******* *************************** *********** ******* consensus_5934#1 GCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAA 420 consensus_5934#2 GCATTTCCGATATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGAAA 315 consensus_5934#0 ----------TATGCCAGGTCCACTTGACATGGATCAGTGCAGTTTTTGGAAGGAAGCAG 277 *********************************************** * consensus_5934#1 ACGGAAGGAAGTGTTTAACACACACCGTTAT-------TGTGCTGGTTGGAAAGCCATTA 473 consensus_5934#2 ACGGAAGGAAGTGTTTAACACACACCGTTAT-------TGTGCTGGTTGGAAAGCCATTA 368 consensus_5934#0 ACGGAAGGAAGTGTTTAACACACACCGTTATGCGTAATTGTGCTGGTTGGAAAGCCATTA 337 ******************************* ********************** consensus_5934#1 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGT 533 consensus_5934#2 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCCCTTTTTGCTAGACGT 428 consensus_5934#0 ACTACTCTGGTTGTTTCATCTTAAGATACTAGTGATAGAACCCCC-TTTTTGCTAGACGT 396 ********************************************* ************** consensus_5934#1 CGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 593 consensus_5934#2 CGTGCTCTTCACTACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 488 consensus_5934#0 CGTGCTCTTCACCACTCATTAGTGTGAATCATAAGTTTCTCGGTTCCTTCTTAACTCTTA 456 ************ *********************************************** consensus_5934#1 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 653 consensus_5934#2 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 548 consensus_5934#0 CTCTAAACTCTTATCATGAGCCAGTCAGTAGAATCGAAATCGGAATTCATATTTAGGCGT 516 ************************************************************ consensus_5934#1 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGAT--------- 704 consensus_5934#2 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAG 608 consensus_5934#0 ATTTTTGTATCCCAGATCTGCCACGATTTTTTATAGTTCTGTAATAGAGATAGAATGAAG 576 *************************************************** consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 AAAGGCATACTAGCAAACAAACTAT----------------------------------- 633 consensus_5934#0 AAAAGCATACTAGCAAACAAACTATTTCTCGAAACTTACAAACACTTACAAGGATTGATA 636 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 AATGGAAAAAGAATAAAAAGAGGATGAATAAGTGGAACAATAACTACAAAATGGAAAACA 696 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 TATTTCCGCAGAAAAAAACACATAAGCTAACGCAAAACATATTTAACCGTGCATTGTGAA 756 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 ACCCCCCCGTTGTGAATCATACAATAGTGCTCGTAGTGGCAGATGACAAGCTAGCAGGCA 816 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 GTACAAGTAACTGGAACGTGGTAAATGTAGCATACGACCAGAAGTGTGAAATAGAAACGC 876 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 GTATGTAAGTGGGATGTGTATGTTGAATGGCAACTCGATGCATCAGAACAGGAATCCGTT 936 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 AAACGAAGTAGAGAGAGAGGGAGATAGAGAGCGAGAGAGAGAATTGTAAAAATAGATAGA 996 consensus_5934#1 ------------------------------------------------------------ consensus_5934#2 ------------------------------------------------------------ consensus_5934#0 CATATCATTTAAAACGTTAAAACGAAAGCTCGAAACAAGCAAAGGATAAAATCGTCACCG 1056 consensus_5934#1 ---------------------------------------------------------- consensus_5934#2 ---------------------------------------------------------- consensus_5934#0 TACGAAATGTATGAGCGTAGCAAGAGCGAAAAGAAGGAACAATGAAATATGTAAGAGG 1114 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||