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Anopheles gambiae
cluster # 5941 cluster # 5941       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5941#0 length = 1301 sequences # 3  
consensus_5941#1 length = 624 sequences # 2  

consensusID : consensus_5941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1301
fasta sequence
                              [CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA]

[+] EMBL BM583431             [CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACTTATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACTCTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCTATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACATTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTTAGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCACGTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCGTATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTTTCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM655107             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccGCACGCACCCACTGGTTTGAACCACGTCCCCAACCAC GGGGGATCGAGAAATGC TTCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGATGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGC                                                                                                                     ]
[+] EMBL BM576525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ccGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA]


>consensus_5941#0 CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACT TATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACT CTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCT ATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACA TTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTT AGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCAC GTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCG TATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC ACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTT TCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGA TGCACTATCCCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCCAG CTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGAAG GAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCGAA GTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAATGT GTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTGTGTGTGT GTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACTAAGC GTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATAAAGC TGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACATAGA CCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAAAAAA CACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAGTTCA AATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACAAACA AACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA



consensusID : consensus_5941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence
                              [GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC]

[+] EMBL BX611127             [GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGTGTG                                                                                                                                          ]
[+] EMBL BX608087             [                                                                                    ACTGGTTCGAACCACGTCCCCAACCACGGGGGATCGAGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAGCGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTATCAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAGGTGTGCGTGTGCGTGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACATAACGCTGCGTTGCACCCTTTTCAC]


>consensus_5941#1 GCCGAATTAATTAAGAATTAGTCGTGTCCCTGTGTGTGTTCAATGGTTCAACCGAGTCTA ATGCTCAAGGCACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGGATCG AGAAATGCTTCCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACA AAAACCAATGCACCATCTCCCATCCCGATTTTGCCAAAATCATCCACTCACCAACCGAAG CGAGGCCAGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTTGTTTTCGGTAT CAGAAGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAA CTCGAATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGG CATGTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCG TGTGTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAA ACTAAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAAAAACGATTCACCACCACAT AACGCTGCGTTGCACCCTTTTCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5941#0      CCGGCGCTCTGCACGTTTTTAACACAAAGCCAAGCACACGCACATACACGCAGAGAAACT 60
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      TATCACTACTTGTTACAACCCCTTATTACTACTAGTACTACCAATTACTAACTACTAACT 120
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      CTATCACTGCTACTACACGGGCAAGAAAGAAAGAAAGAAGAAGTTGAAAATCCCGTATCT 180
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      ATTACAACTTCTGATCGATCGATCGATGTTACACCACCACCATCATTCATTCCATGTACA 240
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      TTTTTGTTGAAAGTGTGGTTTCATAGTTTGTGTGTTTTTTTGTGTTGATCCCTCCAGTTT 300
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      AGGGATCTGCCTCTGATCTGCTGGCAGCAGAAATCCGCACAATGCATCTCTCCTTGCCAC 360
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      GTCTTTCTTTTCACACACACACAGCCACCCACAGTTAGATTGTTAGTCGAATTAAGCGCG 420
consensus_5941#1      ---------------------------------------------GCCGAATTAATTAAG 15
                                                                   * ********    *

consensus_5941#0      TATTAAGCGTGTCCGTACGTGTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 480
consensus_5941#1      AATTAGTCGTGTCCCT----GTGTGTGTTCAATGGTTCAACCGAGTCTAATGCTCAAGGC 71
                       ****  ******* *    ****************************************

consensus_5941#0      ACAGCACGCACCCACTGGTTTGAACCACGTCCCCAACCACGGGGGGATCGAGAAATGCTT 540
consensus_5941#1      ACAGCACGCACCCACTGGTTCGATCCACGTCCCCAACCACGGGGG-ATCGAGAAATGCTT 130
                      ******************** ** ********************* **************

consensus_5941#0      TCCAAGGACGTATCTTAATCGAGGATGGACGGAATGAATTGCAACTTAACAAAAAACCGA 600
consensus_5941#1      -CCAAGGACGTATCTTAGTCGAGGGCGAACGAAATGAATTGCAACTGAACAAAAA-CCAA 188
                       **************** ******  * *** ************** ******** ** *

consensus_5941#0      TGCACTATC--CCATCCCGATTTTGCCAAAAACAATCCACTCACCAACCAGAGCAAGGCC 658
consensus_5941#1      TGCACCATCTCCCATCCCGATTTTGCCAAAATCA-TCCACTCACCAACCGAAGCGAGGCC 247
                      ***** ***  ******************** ** **************  *** *****

consensus_5941#0      AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGTTCGTTTTTTTTTTGTTTTCAGTACCAGA 718
consensus_5941#1      AGCTTTTCTATGTTTAGCTTTCGGCCCGTGGCTCGTTTTTTT---GTTTTCGGTATCAGA 304
                      ******************************* **********   ****** *** ****

consensus_5941#0      AGGAGGATATGCTAAAAGTAGGGGACGAACGCCCTAGTAGCGAACATGCATTAGAATTCG 778
consensus_5941#1      AGAAGGATATGCTAAGAGTAGACGACGAACGCCCTAGTAGCGAACATGCATTAGAACTCG 364
                      ** ************ *****  ********************************* ***

consensus_5941#0      AAGTAGGTTACTCTGCTCCGTTCATTTCAACCTTCCTCTTCCACCCGCATGTGTGGCAAT 838
consensus_5941#1      AATTAGGTTACTCTGCTCCGTTCATTTCACCCTTCCTCATCCACCCGCGTGTGTGGCA-T 423
                      ** ************************** ******** ********* ********* *

consensus_5941#0      GTGTGGCAATGTGGAGCCACCAAATCCTCACCCCCAGCTAGTAGGTGTGCGTGTG--TGT 896
consensus_5941#1      GTGTGGCAATGTGGAGCCCCCAAACCCTCACCCCCAGCTAGTAAGTGTGCGTGTGCGTGT 483
                      ****************** ***** ****************** ***********  ***

consensus_5941#0      GTGTGTGTGGGTTCGGTTTAGGATAAGTTGTTTCTAGTAGCGAAATGGAAGCTCTAAACT 956
consensus_5941#1      GTGTGTGTGGGTTCGGTTTAGGATAAGTTGATTCTATTAGCGAAATGGAAGCTCTAAACT 543
                      ****************************** ***** ***********************

consensus_5941#0      AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAAATAAATCGATTCACCACCACATA 1016
consensus_5941#1      AAGCGTCAATAGCGAAAGGTATTACAACCAACAAAAA--AAAACGATTCACCACCACATA 601
                      *************************************  *** *****************

consensus_5941#0      AAGCTGCGTTGCACCCTTCTCACACCTGTTCACGTATATACACACACACACACACACACA 1076
consensus_5941#1      ACGCTGCGTTGCACCCTTTTCAC------------------------------------- 624
                      * **************** ****                                     

consensus_5941#0      TAGACCCCCATCATCTCTATCTCTCTCTTTCGTGCATAACCTATAAGAGGGCAAGAAAAA 1136
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      AAAACACTCACACATACACACACAGAGAACACAAGCAAGCAAGCAAGCCAGAGAAAGTAG 1196
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      TTCAAATGAAAACGCAAAAAAAGAGCAACTCTATCATAACGTGGTTATAAGAGCAAAACA 1256
consensus_5941#1      ------------------------------------------------------------
                                                                                  

consensus_5941#0      AACAAACAAAAAAAGCGAGTCAAAACAAAAAATCGTGATTACAAA 1301
consensus_5941#1      ---------------------------------------------
                                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)