These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1583 fasta sequence [CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGGTACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTCTAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCGGCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAATACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAGCACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTC-TCTGAAGAACATCGTCGACGAGGAGGTGCACGATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGGTGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCGGATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGACTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAAGGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTACTCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGNTACNGCTGTAACAAGCCGTTTATG] [+] EMBL BM655666 [CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGGTACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTCTAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCGGCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAATACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAGCACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGAT ] [+] EMBL BM642224 [ ccgCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCG ] [+] EMBL BM636498 [ ccgAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTC TCTGAAGAACATCGTCGACGAGGAGGTGCAC ] [+] EMBL BX627972 [ CGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGG ACCTGAAGTTAC GGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTCTTCTGAAGAACATCGTCGACGAGGAGGTGCACGATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGGTGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCGGATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGACTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAAGGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTACTCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGNTACNGCTGTAACAAGCCGTTTATG] consensusID : consensus_5956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [CCCGTGACGGACGGTGACGTTCAATCACTACCACTGAACAACAACCACCAGAACCAAACGCAAATAATTTACCTAATGGAAATGCTGCTAGCGGTCACAGGACACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCTTCGTTGAGATACAACCATCGCAGGTCATCATTCACACACCTCAAACGGAAACGCAACCGCAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTGGACCTTCATCCTTCGGCTTCATCCATCTCCCCCACTGCTACTACCATTACCACCACCTCCACCACCACTACCTCCACTACTACCCCCATGAAGAGCCCACCCACTCGATCAAAGTCGAAAGCTCCCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCTCCCCTTCTTCTTCTAGACAGAACAAATA] [+] EMBL BX613371 [CCCGTGACGGACGGTGACGTTCAATCACTACCACTGAACAACAACCACCAGAACCAAACGCAAATAATTTACCTAATGGAAATGCTGCTAGCGGTCACAGGACACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCTTCGTTGAGATACAACCATCGCAGGTCATCATTCACACACCTCAAACGGAAACGCAACCGCAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTGGACCTTCATCCTTCGGCTTCATCCATCTCCCCCACTGCTACTACCATTACCACCACCTCCACCACCACTACCTCCACTACTACCCCCATGAAGAGCCCACCCACTCGATCAAAGTCGAAAGCTCCCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCTCCCCTTCTTCTTCTAGACAGAACAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5956#0 CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGG 60 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTC 120 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAAC 180 consensus_5956#1 ------------------------------CCCGT-GACGGACGGTGACGTTCAATCACT 29 * ** * *** **** * * ** consensus_5956#0 ACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAAC 240 consensus_5956#1 ACCACTGAACAACAACCACCAGAAC-CAAACGCAAATAATTTACCTAATGGAAATGCTGC 88 ***** * ** ****** * ***** ** ** ** * * consensus_5956#0 CGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCG 300 consensus_5956#1 TAGCGGTCACAGGA-------CACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCT 141 ** * * ** ** * *** * ** * * * * ** * * consensus_5956#0 GCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAA 360 consensus_5956#1 TCG-TTGAGATACAACCATCGCAGGTC-ATCATTCACACACCTCAAACGG---AAACGCA 196 ** * ** * * ** *** * *** **** * consensus_5956#0 TACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAG 420 consensus_5956#1 ACCG--CAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTG 254 ** **** * * ** *** * * * * *** *** * * * consensus_5956#0 CACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCG 480 consensus_5956#1 GACCTTCATCCTTCGGCTTCATCCATCTCC-CCCACTGCTACTACCATTACCACCACCTC 313 ** * ** ** * * ** * * * * * * *** * consensus_5956#0 CTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGC 540 consensus_5956#1 CACCACCACTACCTCCACTACTACCCCCA-TGAAGAGCCCACCCACTCGATCAAAGTCGA 372 * * * ***** * *** * * *** * * ****** ** * * * consensus_5956#0 GAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAG 600 consensus_5956#1 AAGCTC-----CCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGA-GG 426 *** * *** * ** * * * * ** * *** *** * consensus_5956#0 CTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAG-TACCGCGAAACGT 659 consensus_5956#1 ATGGTGCCTCACCGACAACAC-CACCAACTCCCACTGGCCAGAAGGCTAACGCCAAA--- 482 * * ** *** * *** * * ** * ** * ** *** *** consensus_5956#0 GCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGG 719 consensus_5956#1 GCAACCGCTTCCAAAACTAAA--ACCGAAAGTAAAAA-GAAATCCTCCCCTTCTTCTTCT 539 ** * ** * ** *** ** ** * * * **** ** * ** consensus_5956#0 AAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCAC 779 consensus_5956#1 AGACAGAACAAATA---------------------------------------------- 553 * * ** * * consensus_5956#0 CAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAG 839 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 AGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAA 899 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 CGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTC 959 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCT 1019 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTA 1079 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 ACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGT 1139 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 GCTGGAGTACTTCTCCAATCTGGACATTCTCTGAAGAACATCGTCGACGAGGAGGTGCAC 1199 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 GATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGG 1259 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCG 1319 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 GATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGA 1379 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 CTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAA 1439 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 GGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTAC 1499 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGN 1559 consensus_5956#1 ------------------------------------------------------------ consensus_5956#0 TACNGCTGTAACAAGCCGTTTATG 1583 consensus_5956#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||