cluster # 5957

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Anopheles gambiae
cluster # 5957 cluster # 5957 Sequences # 5 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5957#0 length = 512 sequences # 1
consensus_5957#1 length = 443 sequences # 1

consensus_5957#2 length = 358 sequences # 1
consensus_5957#3 length = 134 sequences # 1
consensus_5957#4 length = 84 sequences # 1

consensusID : consensus_5957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTACAATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACGTGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTGTGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTACAATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAGCTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAAAGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAACCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAATTGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG]

[+] EMBL BM649177             [GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTACAATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACGTGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTGTGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTACAATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAGCTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAAAGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAACCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAATTGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG]




>consensus_5957#0
GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTACA
ATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACGT
GCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTGT
GGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTACA
ATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAGC
TGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAAA
GTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAAC
CGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAATT
GCGGTCGCTACTTCGTCTGCACGCTCAAGAAG

consensusID : consensus_5957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCATACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAAGACCCAGAAGAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCGAAGGGAAAGGTCCGCGACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGACAAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGGCTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCGTGAGCTCTGCCAGAAGGGGCTCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAGACGATCCAGTGGCGTAAGCTGGAGATTCCGTT]

[+] EMBL BM654127             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCATACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAAGACCCAGAAGAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCGAAGGGAAAGGTCCGCGACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGACAAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGGCTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCGTGAGCTCTGCCAGAAGGGGCTCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAGACGATCCAGTGGCGTAAGCTGGAGATTCCGTT]




>consensus_5957#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCAT
ACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAAGACCC
AGAAGAAGAAGGAGGGAGGATCCGGAGGAAAGGCCAAGAAGAAGAAGTGGTCGAAGGGAA
AGGTCCGCGACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGACAAACTGT
ACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGGCTGAAGA
TTCGTGGATCGCTGGCCAAGCGAGGCCTGCGTGAGCTCTGCCAGAAGGGGCTCATCAAGC
TGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAGACGATCCAG
TGGCGTAAGCTGGAGATTCCGTT

consensusID : consensus_5957#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [GACAGCAGGAGCCTTCCCGTGTGCCGGACCGCGCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACAGACGCAGCCGGACCGCAGACAGGACCGCACCACACAACAACAGCCCCAAAATTCACAGATCCAAGATGACCGCCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTACAAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAATCTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGACACGCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC]

[+] EMBL BX623552             [GACAGCAGGAGCCTTCCCGTGTGCCGGACCGCGCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACAGACGCAGCCGGACCGCAGACAGGACCGCACCACACAACAACAGCCCCAAAATTCACAGATCCAAGATGACCGCCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTACAAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAATCTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGACACGCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC]




>consensus_5957#2
GACAGCAGGAGCCTTCCCGTGTGCCGGACCGCGCCGAAGCAAACCAAGTGCCGACACACT
ACTCGCAACCAGGAGCCATCGGTGACAGACGCAGCCGGACCGCAGACAGGACCGCACCAC
ACAACAACAGCCCCAAAATTCACAGATCCAAGATGACCGCCACACCGTCCAGTTCGGCCG
TGCGTGCCCTCTCGCTGGAGTACAAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCG
TGAAGCTGCTGAACGAGGACAATCTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGG
ACACGCTCTACCAGGGCGGCTACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC

consensusID : consensus_5957#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [GGCTGCGGCCCGACCAGCGTCGCCCGAGCACCGTCCACGAACAGGGCGGTCCCTTCGGCCAGCCCGAGCACCGGTGCCTCGTTCAGCTCGTGAGAGATGGTTGAGGCGCTCCGGGCGCGTGTGGCCCTTGTGCG]

[+] EMBL CNS09R9T             [GGCTGCGGCCCGACCAGCGTCGCCCGAGCACCGTCCACGAACAGGGCGGTCCCTTCGGCCAGCCCGAGCACCGGTGCCTCGTTCAGCTCGTGAGAGATGGTTGAGGCGCTCCGGGCGCGTGTGGCCCTTGTGCG]




>consensus_5957#3
GGCTGCGGCCCGACCAGCGTCGCCCGAGCACCGTCCACGAACAGGGCGGTCCCTTCGGCC
AGCCCGAGCACCGGTGCCTCGTTCAGCTCGTGAGAGATGGTTGAGGCGCTCCGGGCGCGT
GTGGCCCTTGTGCG

consensusID : consensus_5957#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [CACATACACACAGATACGGGACACGGAACACGGAACAGGAATAACAATCGAGGCAAAACAAAGCATCGAGCTTTTTCGAACGAG]

[+] EMBL BX614365             [CACATACACACAGATACGGGACACGGAACACGGAACAGGAATAACAATCGAGGCAAAACAAAGCATCGAGCTTTTTCGAACGAG]




>consensus_5957#4
CACATACACACAGATACGGGACACGGAACACGGAACAGGAATAACAATCGAGGCAAAACA
AAGCATCGAGCTTTTTCGAACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5957#1      CCGCGGACGCGTGGGCGGACGCGTGGGCGCCGCCGACGTTCTCTTTCTTTTCGAGTCCAT 60
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ------------------------------------------------------------
consensus_5957#2      ----------------------------GACAGCAGGAGCCTTCCCGTGTGCCGGACCGC 32
consensus_5957#0      -GACCCACGCGTCCGCCCACGCGTCCGCTCGAGCAGAACTGCTTGGCCGGGTACGCGTAC 59
                                                                                  

consensus_5957#1      ACTTCAAAATGCCTCCGAAGAAGGATACCAAGGGATCGGCGAAACAGCCGCAAAA-GACC 119
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ----------------------GGCTGCGGCCCGACCAGCG--TCGCCCGAGCAC-CGTC 35
consensus_5957#2      GCCGAAGCAAACCAAGTGCCGACACACTACTCGCAACCAGGAGCCATCGGTGACA-GACG 91
consensus_5957#0      AATCCGTCGCTGGAACGCTGCACGGCCGACCAGAGCGTTTGCTTCCCCGGGGAGTTCACG 119
                                                                                  

consensus_5957#1      CAGAAGAAGAAGGAGGGAGGATCCGGAGGA-AAGGCCAAGAAGAAGAAGTG----GTCGA 174
consensus_5957#4      CACATACACACAGATACGGGACACGGAACA-CGGAACAGGAATAACAATCG----AGGCA 55
consensus_5957#3      CACGAACAGGGCGGTCCCTTCGGCCAGCCC-GAGCACCGGTGCCTCGTTCA----GCTCG 90
consensus_5957#2      CAGCCGGACCGCAGACAGGACCGCACCACA-CAACAACAGCCCCAAAATTC----ACAGA 146
consensus_5957#0      TGCATGGGCCCGGGTCGGTTCCCCGATCCGGCCGATCCGACCTCGTACTTCTGGTGCGTG 179
                                             *                                    

consensus_5957#1      AGGGAAAGGTCCGC-GACAAGCTCAACAACCAGGTCCTGTTCGACAAGGCCACGTACGAC 233
consensus_5957#4      AAACAAAGCATCGA-GCTTTTTCGAACGAG------------------------------ 84
consensus_5957#3      TGAGAGATGGTTGA-GGCGCTCCGGGCGCGTGTGGCCCTTGTGCG--------------- 134
consensus_5957#2      TCCAAGATGACCG---CCACACCGTCCAGTTCGGCCGTGCGTGCCCTCTCGCTGGAGTAC 203
consensus_5957#0      TGGAACATGTTCGGTGGCTACCTGCAGTACAAGATGCAGTGCCCGATGGGCCAGGTGTAC 239
                          * *     *                                               

consensus_5957#1      AAACTGTACAAGGAGGTCCCTGCCTACAAGCTGATCACCCCATCGGTTGTGTCGGAAAGG 293
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ------------------------------------------------------------
consensus_5957#2      AAAAGCCTGCAGGAGGAACCGGTCGAAGGGTTCCGCGTGAAGCTGCTGAACGAGGACAAT 263
consensus_5957#0      AATGCGTTCCGCGGACGGTGTGCCTTTGCGGTGGCGGGACGTTCGCTGCCGTTTGATGAG 299
                                                                                  

consensus_5957#1      CTGAAGATTCGTGGATCGCTGGCCAAGCGAGGCCTGCG--TGAGCTCTGCCAGAAGGGGC 351
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ------------------------------------------------------------
consensus_5957#2      CTGTTCGAGTGGGAGGTAGCCATCTTCGGGCCGCCGGA--CACGCTCTACCAGGGCGGCT 321
consensus_5957#0      CTGGACGACGAGCTAGCGGCGGCTGAAGTTGCCGAGGAGTCGCACCCAGCGGAAGTCGAA 359
                                                                                  

consensus_5957#1      TCATCAAGCTGGTCGTGCAACACCATGCCCAGGTCATCTACACCCGCACCACGAAGGGAG 411
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ------------------------------------------------------------
consensus_5957#2      ACTTCAAGGCGCACATGAAATTTCCCCCAGACTATCC----------------------- 358
consensus_5957#0      AGTGCGGTGGAGCCGGTGGAACCGGAGGTTGAGCCCGTCGCCCCGGTAGCCGAGGAGCAA 419
                                                                                  

consensus_5957#1      ACGATCCAGTGGCGTAAGCTGGAGATTCCGTT---------------------------- 443
consensus_5957#4      ------------------------------------------------------------
consensus_5957#3      ------------------------------------------------------------
consensus_5957#2      ------------------------------------------------------------
consensus_5957#0      CCGAAGCTGAAGGTAAAGTTCCAGTGTCTGGAGGAGGGCACCTTTGCCGATCCGAACAAT 479
                                                                                  

consensus_5957#1      ---------------------------------
consensus_5957#4      ---------------------------------
consensus_5957#3      ---------------------------------
consensus_5957#2      ---------------------------------
consensus_5957#0      TGCGGTCGCTACTTCGTCTGCACGCTCAAGAAG 512