These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 783 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA-CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC-GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTGTAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCTCGCTGCAGATGGTG] [+] EMBL BM588845 [CCGCGGACGCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGGCGGTGCTGTTTCCGGGCAAGAAACGGCTCTCCGCCTCGCTCAAGCGC ] [+] EMBL BM641021 [ ccgCGAATATGTGCGGAGTG TTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTTGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCTCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGACGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTGT ] [+] EMBL BM641287 [ ccgCTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCACTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTCACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTATAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCTCGCTGCAGATGGTG] [+] EMBL BM645419 [ ccGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTAAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACAC ] consensusID : consensus_5960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGC] [+] EMBL BM647076 [CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5960#0 -----CCGCGGAC-----GCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATG 50 consensus_5960#1 CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATG 60 * **** ** ** * * * * *********************** consensus_5960#0 TGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCA 110 consensus_5960#1 TGCGGAGTGTTTT-CCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCA 119 ************* ***************************************** **** consensus_5960#0 TGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGT 170 consensus_5960#1 TGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGT 179 ************************************************************ consensus_5960#0 GTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAG 230 consensus_5960#1 GTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAG 239 ************************ *********************************** consensus_5960#0 TACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCG 290 consensus_5960#1 TACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCG 299 ***************** ** *************************************** consensus_5960#0 ATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCC 350 consensus_5960#1 ATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCC 359 ************ *********************************************** consensus_5960#0 GCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGT 410 consensus_5960#1 ACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGT 419 *********************************************************** consensus_5960#0 CACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGT 470 consensus_5960#1 CACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGT 479 ************************************************************ consensus_5960#0 GCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGA 530 consensus_5960#1 GCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGA 539 ************************************************************ consensus_5960#0 GAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGC-TCTGCTGGGTGGATT 589 consensus_5960#1 GAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATT 599 *** **************************************** *************** consensus_5960#0 CGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGG 649 consensus_5960#1 CGCTGGGCGAGTTTCTGACCGGC------------------------------------- 622 *********************** consensus_5960#0 TGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCT 709 consensus_5960#1 ------------------------------------------------------------ consensus_5960#0 CCATCTGGAACTTTGTAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCT 769 consensus_5960#1 ------------------------------------------------------------ consensus_5960#0 CGCTGCAGATGGTG 783 consensus_5960#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||