These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence [CCGCGGACGCGTGGGCGCTGCGAAGCGAATTCAGTGTTCAGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAAACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATAT--------ACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGC--TCCGTATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA] [+] EMBL BM642639 [CCGCGGACGCGTGGGCGCTGCGAAGCGAATTCAGTGTTCAGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAAACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATAT ACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGC TCCGTATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAA ] [+] EMBL BM576309 [ ccgAAAGTAAGTGTGATTGAGGAAAAAGAGTACATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTCTCTATGGTTGGCTTCGTGCTTGAATGCTTTAAAGCCTTGTATTCGCGAAGCAAAA AAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA] consensusID : consensus_5964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCTTATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTCTATGGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAG--AAAAAAAC-AAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTC] [+] EMBL BX624329 [AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCTTATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTCTATGGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAG AAAAAAAC AAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTT ] [+] EMBL BX604634 [ CGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGTTTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTATATTTCACCTCTATAGTCGTCCTTCTCTATCCCGTTCTCTGCATAAGTGCCCTCCCGCTGCGAAGCGAATTCAGTGAAGGAGTTAGAAAAGAAGAAAAAAAAACAAAAAAAAACGCTTTTTTAAAGCATAAAAGTCACTAAAGAGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAGTAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAAAAGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGATACTATTTAGAGTGAAAGAAGACAAAACTAAGGACAAACAAAAAGAATGAAAAAAAATGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTTATAGGTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTTTGTTC] consensusID : consensus_5964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCGCGGACGCGTGGGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGTTGATGCATTATCGATCAAATAATAAAACGTACTGTAGTCGATACACGTAGGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGCCGCCGAGAGGTGTGGCGGTGGGATCGTCCCCGGATGTCGCGTTAATGGGCAACATTAACAAAACATTACGATCAATCGAACGGGCAAATTAAAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCCGGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATTAATTAT] [+] EMBL BM614389 [CCGCGGACGCGTGGGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAATAAACATATACACACACACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGTCTATCCGTATTATTACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGCGGTGTGTTGATGCATTATCGATCAAATAATAAAACGTACTGTAGTCGATACACGTAGGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGCCGCCGAGAGGTGTGGCGGTGGGATCGTCCCCGGATGTCGCGTTAATGGGCAACATTAACAAAACATTACGATCAATCGAACGGGCAAATTAAAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCCGGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATTAATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5964#0 ------------------------------------------------------------ consensus_5964#1 AGGTATTGTCTCTTCATAGCTTACAAGTTATGATGTAATTGGATCTTTTTATGGTAGTCT 60 consensus_5964#2 ---------------------------CCGCGGACGCGTGGGCAAGCTATAAGTTAATGT 33 consensus_5964#0 ------------------------------------------------------------ consensus_5964#1 TATCGGATAACAAAATCTTATCGCAATTCTGCTTGAGCTTAAGCTAAGCATACGCAATGT 120 consensus_5964#2 GAAAGAGAAAGAGAGCCCTAATAAGGT----CGTAAAATAAACATATACACACACA-CAC 88 consensus_5964#0 ------------------------------------------------------------ consensus_5964#1 TTATTATGCAGCAAAAGTAATAAAAAACGCTACTCTCTTCATCTATTTTTATTTCACCTC 180 consensus_5964#2 ACACACCCAGACACACATACGCAAAGACA-TGTTTTGTGTATGTCTATCCGTATTAT--- 144 consensus_5964#0 -----------------------------CCGCG--GACGCGTGGGCGCTGCGAAGCGAA 29 consensus_5964#1 TATGGTCGTCCTTCTCTATCCCGTTCTCTGCATA--AGTGCCCTCCCGCTGCGAAGCGAA 238 consensus_5964#2 TACAATCAATTATGCATAAATAATTAAACGCGCAGCATTACTAATTGAATTTAAAGCAGG 204 * * * **** consensus_5964#0 TTCAGTGTTC-AGTTAGAAAAGAAGAAAAAAAAAAAAAACAAAAAAACGCTTTTT-AAAG 87 consensus_5964#1 TTCAGTGAAGGAGTTAGAAAAGAAGAAAAAAACAAAA------AAAACGCTTTTTTAAAG 292 consensus_5964#2 TGGGACGAAG--ATGAGGAAAGAATGCGTAAAGGATA------ATGAAATTTAACAAAAA 256 * * * ** ****** *** * * * * ** *** consensus_5964#0 CATAAAAGTCACTAAAGAGAGGAGGAACTAGAGGAAAAGAAGATAAACATGAAAATGAAG 147 consensus_5964#1 CATAAAAGTCACTAAAGAGAG---GAACTAGAGGAAAAGAAGATAAACATGAAAATGAAG 349 consensus_5964#2 TTGAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATAT 316 * * * * * * * *** * * * ** * consensus_5964#0 TAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATTGAGGAAA--A 205 consensus_5964#1 TAAGAAAATAGATAAAACGAAAACTAAAAATCAGTAAAGTAAGTGTGATNGAGGNAA--A 407 consensus_5964#2 GCGGTGTGTTGATGCATTATCGATCAAATAATA--AAACGTACTGTAGTCGATACACGTA 374 * * *** * * *** * * *** * *** * ** * * consensus_5964#0 AGAGTAAATAAAACAGAAGTAAAGAAGAAATCGTGTGTATAGCAAGCGAACTAAAGGTGA 265 consensus_5964#1 AGAGTAAATAAAACAGAAGTAAAGAAGGAAACGTGTGTATAGCAAGCGAACTAAAGGTGA 467 consensus_5964#2 GGAAAGGATAAAACAATGGGGCGCCTCTTTCCGCATGC-CGCCGAGAGGTGTGGCGGTGG 433 ** ******** * ** ** * ** * * **** consensus_5964#0 TACTATTTA-GAGTGAAAGAAGACAAAACTAAGGACAAACAAAAGGAATGAAAAA--AAA 322 consensus_5964#1 TACTATTTA-GAGTGNAAGAAGACNAAACTAACAACNAACAAAAAGAATGAAAAA--AAA 524 consensus_5964#2 GATCGTCCCCGGATGTCGCGTTAATGGGC-AACATTAACAAAACATTACGATCAATCGAA 492 * * * ** * * ** * *** * ** ** ** consensus_5964#0 TGTGCAAAAAATGGCCGGTAACAATTAGGCAGTAAAATGTCACTATATATGCTTTGTTTT 382 consensus_5964#1 TGTGCAAAAAATGGGCGGTAACAATTANGCAGTNAAATGTCACTATATATGCTTTGTTTT 584 consensus_5964#2 CGGGCAAATTA-AAACACCAACTCTCACACATCCACAAACACACACACACAAACGGGCCC 551 * ***** * * *** * * ** * * * * * * consensus_5964#0 ATAG---GTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTT 439 consensus_5964#1 ATAG---GTTAATAGTTGTGAATTTAATTCAATTATCGTGTCTGTTTTTTGCCTTCTCTT 641 consensus_5964#2 GGGGACAGTCACCAGGTGTGCGCTGTGTGTAGACAGCATGCACAGATGTAACTAATTATT 611 * ** * ** **** * * * * * ** * * * * ** consensus_5964#0 TGTTCTCTATGGTTGGCTTCGTGCTTGAACGCTTTAAAGCCTTGTATTGGCGAAGCAAAA 499 consensus_5964#1 TGTTC------------------------------------------------------- 646 consensus_5964#2 AATTAT------------------------------------------------------ 617 ** consensus_5964#0 ACAGAAGCAAGCTATAAGTTAATGTGAAAGAGAAAGAGAGCCCTAATAAGGTCGTAAAAT 559 consensus_5964#1 ------------------------------------------------------------ consensus_5964#2 ------------------------------------------------------------ consensus_5964#0 AAACATATACACACACACCCAGACACACATACGCAAAGACATGTTTTGTGTATGGCTCCG 619 consensus_5964#1 ------------------------------------------------------------ consensus_5964#2 ------------------------------------------------------------ consensus_5964#0 TATTATTACAATCAATTATGCATTAATAATTAAACGCGCAGCATTACTAATTGAATTTAA 679 consensus_5964#1 ------------------------------------------------------------ consensus_5964#2 ------------------------------------------------------------ consensus_5964#0 AGCAGGTGGGACGAAGATGAGGAAAGAATGCGTAAAGGATAATGAAATTTAACAAAAATT 739 consensus_5964#1 ------------------------------------------------------------ consensus_5964#2 ------------------------------------------------------------ consensus_5964#0 GAGCAACAGGCAGGCACACAGCGTGCGAGAAGCACCTTCCGTGTGTCCCGTGATATATGC 799 consensus_5964#1 ------------------------------------------------------------ consensus_5964#2 ------------------------------------------------------------ consensus_5964#0 GGTGTGGTGATGCATTATCGATCAAATAATAAAACGTACTGTA 842 consensus_5964#1 ------------------------------------------- consensus_5964#2 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||