These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [GGCCAGAATCNCCACGAGNGGTCGACTCAACTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTG-GCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACCACAGCAC-CACTACCAGGTAGAACTTCCTCCTTG-TTTTGCCTAGAGCGAAGAGATGCATCCAACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGCTGTGTGGTGTCCGAGCGTAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAACANCACAAGCAACACGCACGCACACGGACTGCTA] [+] EMBL BX468222 [GGCCAGAATCNCCACGAGNGGTCGACTCAACTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTG GCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACCACAGCAC CACTACCAGGTAGAACTTCCTCCTTG TTTTGCCTAGAGCGAAGAGATGCAT ] [+] EMBL AL693004 [ cgnggtTTGTTTGAATTAGCA CAGCATCAGCA CNGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGTGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACCATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAA CGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGCCAACTACACAACA CACACACTACCAGGTAGAACTTCCTCCTTGTTTTTGCCTAGAGCGAAGAGATGCATCCAACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGCTGTGTGGTGTCCGAGCGTAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAACANCACAAGCAACACGCACGCACACGGACTGCTA] consensusID : consensus_5965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCAGTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACACAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAAAACTGAACGAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGCAGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGAGTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCCAAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTTCTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAGAACAACACATCATCTGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAAACCATAAATTACAACAACATCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAAAAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAACAAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA] [+] EMBL BX618258 [AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCAGTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACACAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAAAACTGAACGAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGCAGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGAGTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCCAAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTTCTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAGAACAACACATCATCTGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAAACCATAAATTACAACAACATCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAAAAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAACAAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA] consensusID : consensus_5965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACACATCGGTCGACTCANCTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAACGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACACACAACAACATAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCCAAACATTCATCCGTCGGTTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCGTAATACGCACATAAGAGGATGACCTGTGTGAC] [+] EMBL AL929789 [CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACACATCGGTCGACTCANCTTTTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGGAGTTAAATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAAAATGTCGGACGATTACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGCACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCAAGCGACCACACCAACATTACGATCCGAGCGGCCATTCGCGCAAGATTGTGACCAAGCTGAAAAACACGGAATCGAACAAGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGAGTGACTTCCGTGCGAATGTGGTGTGTGTGTGAGTGAGTGGTTCTAATCCGGCCAGCGCGCCATGCGAACGAAAAACGAGATCTCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACACACAACAACATAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCCAAACATTCATCCGTCGGTTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCGTAATACGCACATAAGAGGATGACCTGTGTGAC] consensusID : consensus_5965#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [CGATGCGAAGGCAATTAATTCCGTCGGTCGCACCGCCGCCCAGATGGGTGCATTCGTGGCGAACCACGAGGCGGTCGGTACGATCAACAACTTCGTCCCGCTGAAGGACGTGGAGTGCTACACGGTTGCACGGGGCCAAAAGGAGGCGCTGCTGCCGGTGGTGCTGCTGGAGCCATTCCATAGCTTTATCATGCAGGTCAATATCCACCCGGTGCGGATACTGCTGAACCTGCAGCGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGAGCGGTGCTGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA] [+] EMBL CNS08ZDE [CGATGCGAAGGCAATTAATTCCGTCGGTCGCACCGCCGCCCAGATGGGTGCATTCGTGGCGAACCACGAGGCGGTCGGTACGATCAACAACTTCGTCCCGCTGAAGGACGTGGAGTGCTACACGGTTGCACGGGGCCAAAAGGAGGCGCTGCTGCCGGTGGTGCTGCTGGAGCCATTCCATAGCTTTATCATGCAGGTCAATATCCACCCGGTGCGGATACTGCTGAACCTGCAGCGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGAGCGGTGCTGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5965#0 ---------------------------GGCCAGAATCNCCACGAGNGGTCGACTCAACTT 33 consensus_5965#2 CAGAATCGCCNGAGGTTTAAACAGTGCGGACGTACATTACAC-ATCGGTCGACTCANCTT 59 consensus_5965#3 ------------------------------------------------------------ consensus_5965#1 -------------AATTAATTAATGATAAGCACGCTACGAAATGATCATAGTTTCGCCCA 47 consensus_5965#0 TTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGG 93 consensus_5965#2 TTCTATTCCCAGTTGTTTGAATTAGCAACCAGCATCAGCACCAGCACCACTCTGCAAAGG 119 consensus_5965#3 -------------------------------------------------CGATGCGAAGG 11 consensus_5965#1 GTTTCACCATCCAGCCTTCAAAAAAATACACACAAACACACACACACATTAACACAAACA 107 * ** consensus_5965#0 AGTTAA-ATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAA 152 consensus_5965#2 AGTTAA-ATCCAGGAAAGCGGAAGTAAACTACAAAAGCCCTAAACAAGAAGCGAGCGCAA 178 consensus_5965#3 CAATTA-ATTCCGTCGGTCGCA--CCGCCGCCCAGATGGGTGCATTCGTGGCGAAC-CAC 67 consensus_5965#1 CAATCACACTTAAGAAATGAAGAGAAAAAAACGAAACCAAACTAATTGCAA-AACTGAAC 166 * * * * * * * * * * consensus_5965#0 AATGTCGGACGATT-ACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGC 211 consensus_5965#2 AATGTCGGACGATT-ACGACAAGTACGACTTTGAGATGGAGAAGCACATCCACTCGGGGC 237 consensus_5965#3 GA-GGCGGTCGGT--ACGATCA--ACAACTTCGTCCCGCTGAAGGACGTGGAGT-GCTAC 121 consensus_5965#1 GAACGTGGTTGACGCACATTAAAAACCGTTTCAATTCCCCCAAAAAAAGAAACCAACCGC 226 * ** * ** * ** ** ** * * * consensus_5965#0 ACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCA----AGCGACCACACCAACCATTAC-GA 266 consensus_5965#2 ACAGTGGCAAGCAGCGCAGCAAGAAGGAGGCA----AGCGACCACACCAAC-ATTAC-GA 291 consensus_5965#3 ACGGTTGCACGGGGCCAAAAGGAGGCGCTGCT----GCCGGTGGTGCTG-CTGGAGC-CA 175 consensus_5965#1 AGCGTCGCTTACCGATGAGCGCGCCATGCACTTAAAAGCTATAAAGCCACCATGCACAGA 286 * ** ** * * * * * * * * consensus_5965#0 TCCGAGCGGCCATTCGCGCAAGAT-TGTGACCAAGCTGAAAAACACGGAAT---CGAACA 322 consensus_5965#2 TCCGAGCGGCCATTCGCGCAAGAT-TGTGACCAAGCTGAAAAACACGGAAT---CGAACA 347 consensus_5965#3 TTCCATAGCTTTATCATGCA-GGT-CAATATCCACCCGGTGCGGATACTGC---TGAACC 230 consensus_5965#1 GTGCAACACGCTGGCAAAGATGGTATCAGAATCGTATTGTACGTATTGTGGGTACAAGCC 346 * * * * * * * * * consensus_5965#0 AGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGA-GTGACTTCCGTGCGAATGTGGTGT 381 consensus_5965#2 AGAAGTCGCCGCCGAAGTAAGCTAATGGTCGAGGA-GTGACTTCCGTGCGAATGTGGTGT 406 consensus_5965#3 TGCAG-------CGGTACAAAATGCTGGCCTCGGACATGAAGAACCTGCGA--GCGGTGC 281 consensus_5965#1 AAAAACATGAATCCAAGAAAAGGGCTAGACAAACCGTCGCTCGTCTGGCAGGCCAGGCTT 406 * * ** * * * * * ** ** consensus_5965#0 GTGTGTGAGTGA-GTGGTTCTAATCCGGCCAGCGCGCCATGCGAAGCGAAAAACGAGATC 440 consensus_5965#2 GTGTGTGAGTGA-GTGGTTCTAATCCGGCCAGCGCGCCATGCGAA-CGAAAAACGAGATC 464 consensus_5965#3 TGGTGGAGATGATGGAGCGCGAAAAGAAGCGGCGCGGTAAAAAAAAAAAAAAAA------ 335 consensus_5965#1 CTGCCATGATCTTGCCGAGAGAATGCAAAAAGAAAGCTAGGGAAG-AACAACACATCATC 465 * * * * ** * * * * ** * consensus_5965#0 TCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGC-CAACTACACCAC 499 consensus_5965#2 TCTAAAGGCGGTACGGGGTGGGCGGCGCACATTACAAACGACCCTGGGCAACTACAC-AC 523 consensus_5965#3 ------------------------------------------------------------ consensus_5965#1 TGGCAGCACAGTTCGAGCCGAATGAAGATCGGAACGATGGAAGAAAAAAGGTGAACGAAA 525 consensus_5965#0 AGCACCACTACCAGGTAGAACTTCCTCCTTGT-TTTGCCTAGAGCGAA-GAGATGCATCC 557 consensus_5965#2 AACAACA-TAACAGGTAGAACTTCCTCCTTGTATTTGCCTAGAGCGAACGAGATGCATCC 582 consensus_5965#3 ------------------------------------------------------------ consensus_5965#1 ACCATAAATTACAACAACA--TCCAGTGATGTACGAGGCTAGAACGGAGAAACCATGCAA 583 consensus_5965#0 AACCATTCATCCGTCGGATTNTGCTGCTATCTCGTGTGC---TGTGT-GGTGTCCGAGCG 613 consensus_5965#2 AAACATTCATCCGTCGG-TTTTGCTGCTATTTCNTGTGTGCTCGTGTTAGTGTCCGAGCG 641 consensus_5965#3 ------------------------------------------------------------ consensus_5965#1 AAGCAAACGAACAACAACTTACAAAGTGGTACTATACATGTAATTATATACTTACGAAAC 643 consensus_5965#0 TAAATACGCACATANAGGATTGACCCCTGTGTTGACTTTCAAAGGGCAAGCTGAACACAA 673 consensus_5965#2 TAA-TACGCACATAAGAGGATGACCTGTGTGAC--------------------------- 673 consensus_5965#3 ------------------------------------------------------------ consensus_5965#1 AAGCAAAAGGAAAATGAGAATCGCAACAGCGCGATATGCGAGCAGGAACAACTA------ 697 consensus_5965#0 CANCACAAGCAACACGCACGCACACGGACTGCTA 707 consensus_5965#2 ---------------------------------- consensus_5965#3 ---------------------------------- consensus_5965#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||