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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1139 fasta sequence
[TTATTAACAACTTTGGCACAGAATTGCAGGGAAATGAGCGTATCACACTAATACTGTCGCTCAGACCGAGCTTAAGCGAAGGGCAGCAGAATCGTCCTCCTTTTGGTCGTCCGCTTCTTGCTTCTCCGGGAACGTTGCGTTGGGCGGCGATATCTTAAGTCCCTTCAGCTCATCATCATGCACACTGGACAAATCCTCGCACGAATTCCAAGGCTGCAGTGTCGAGTCGGCGAACG-CATAAAGAGCAGCCCGCAGATGATGAGCGTCCCGGAAGTGATGAGGAAAATGATTCTCCATTGCTCCACCGTGTGATTCCCAAGCATTCCGACAATGATTGGAGACACGAATCCCGGCACAACGGTGATCATACCGCTGAAACCCAACAGTATGCCCGCATACCGGGGACTCATGTCGACTAGATTCGCCAGCGGACCAGTGGATACCGCCCCATGCACCGTGGTGGCTAGCGTAAGGAAAATGGTGGCCATGAGCGAATTGCAGCCACTGGACGCGAGGATAAACACGAATATCCCATTCACGACGCAGCATAGGGTGCCGCCCATCTTGCGCACCCCCGTCCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAGATGGGGAATGCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACAC-G-AGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCGCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGATGAACCCAAACAGGGGGAAATTGAGCGCAACGCCCACGGAGCTGCCCAGGTAAGCGGTTACGAACTTGCTCCGTTCGTTCGGGGGAATCGCACTGCCCAGCCATATGGGCATC]
[+] EMBL CNS097BG [TTATTAACAACTTTGGCACAGAATTGCAGGGAAATGAGCGTATCACACTAATACTGTCGCTCAGACCGAGCTTAAGCGAAGGGCAGCAGAATCGTCCTCCTTTTGGTCGTCCGCTTCTTGCTTCTCCGGGAACGTTGCGTTGGGCGGCGATATCTTAAGTCCCTTCAGCTCATCATCATGCACACTGGACAAATCCTCGCACGAATTCCAAGGCTGCAGTGTCGAGTCGGCGAACG CATAAAGAGCAGCCCGCAGATGATGAGCGTCCCGGAAGTGATGAGGAAAATGATTCTCCATTGCTCCACCGTGTGATTCCCAAGCATTCCGACAATGATTGGAGACACGAATCCCGGCACAACGGTGATCATACCGCTGAAACCCAACAGTATGCCCGCATACCGGGGACTCATGTCGACTAGATTCGCCAGCGGACCAGTGGATACCGCCCCATGCACCGTGGTGGCTAGCGTAAGGAAAATGGTGGCCATGAGCGAATTGCAGCCACTGGACGCGAGGATAAACACGAATATCCCATTCACGACGCAGCATAGGGTGCCGCCCATCTTGCGCACCCCCGTCCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAAATGGGGAATGCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACAC G AGTAGAGCCAGGCGACAAACCACACCGTGCCGAAGATGCCGCA ]
[-] EMBL CNS097BF [ CATCATGCACACTGGACAAATCCTCGCACGAATTCCAAGGCTGCAGTGTCGAGTCGGCGAACGCCATATAGAGCAGCCCGCAGATGATGAGCGTCCCGGAAGTGATGAGGAAAATGATTCTCCATTGCTCCACCGTGTGATTCCCAAGCATTCCGACAATGATTGGAGACACGAATCCCGGCACAACGGTGATCATACCGCTGAAACCCAACAGTATGCCCGCATACCGGGGACTCATGTCGACTAGATTCGCCAGCGGACCAGTGGATACCGCCCCATGCACCGTGGTGGCTAGCGTAAGGAAAATGGTGGCCATGAGCGAATTGCAGCCACTGGACGCGAGGATAAACACGAATATCCCATTCACGACGCAGCATAGGGTGCCGCCCATCTTGCGCACCCCCGTCCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAGATGGGGAATGCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACAC GAAGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCGCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGATGAACCCAAACAGGGGGAAATTGAGCGCAACGCCCACGGAGCTGCCCAGGTAAGCGGTTACGAACTTGCTCCGTTCGTTCGGGGGAATCGCACTGCCCAGCCATATGGGCATC]
[-] EMBL BM635069 [ ATTCGCCAGCGGACCAGTGGATACCGCCCCATGCACCGTGGTGGCTAGCGTAAGGAAAATGGTGGCCATGAGCGAATTGCAGCCACTGGATGCGAGGATAAACACGAATATCCCATTCACGACGCAGCACAGGGTGCCGCCCATCTTGCGCACCCCCGTCCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAGATGGGGAATGCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACACAA AGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCGCAAAAGTGGTACACATACTCCCAGGAGGTCCACGAGATGATGAACCCAAACAGGGGGAAATTGAGCGCAACGCCCACGGAGCcgg ]
consensusID : consensus_5986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[CCCTGCATACCGGGGACTCATGTCGNANTAGATTCGCNAGCGGACCAGTTGTATTCCTNNGTCATGCACNCTGTGTGGNTAGCGTAAGGTAATATGGTGCCAATGAGCGAATTTGCANGCCACTGACGCGTAGGATAATACTACGAATATCCCAATTCAACGACGCAGCAATAGGGTGCCGCCCATCGTTGCGCACCTNCNCGGTCCCGGNACAATGTACGCTCCGTGTCTTGACCAAGATGATCCGCCATACCGATCGAGCTACATCGTANCCGCAAACNAGCATACGNCAGGAGATTGGGAAATGCCGGAACAGCAAGCCCGTCAATTGTCGATGTTCCACCCGTGCACGTTGTTGAAATGTACGTCGGTNCTTTGCGTCATCNAGCGTATGTACAGATCCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCNTGCTGCTGCTGCTCCCGCCGTGCTCGTCGATCTGGCCCGTAATGCTCATAGCGAACATTTGCAATGTACTTGCAGCTCATATCGCATGGATGCGAGGATGTTCGGCCGGTGATCGTACACGAAGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCAGCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGATGAACCCAAACAGGGGGAAATGAGCAGCAACGCCCACGACGCTGTAGCCTCGG]
[-] EMBL AL693795 [CCCTGCATACCGGGGACTCATGTCGNANTAGATTCGCNAGCGGACCAGTTGTATTCCTNNGTCATGCACNCTGTGTGGNTAGCGTAAGGTAATATGGTGCCAATGAGCGAATTTGCANGCCACTGACGCGTAGGATAATACTACGAATATCCCAATTCAACGACGCAGCAATAGGGTGCCGCCCATCGTTGCGCACCTNCNCGGTCCCGGNACAATGTACGCTCCGTGTCTTGACCAAGATGATCCGCCATACCGATCGAGCTACATCGTANCCGCAAACNAGCATACGNCAGGAGATTGGGAAATGCCGGAACAGCAAGCCCGTCAATTGTCGATGTTCCACCCGTGCACGTTGTTGAAATGTACGTCGGTNCTTTGCGTCATCNAGCGTATGTACAGATCCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCNTGCTGCTGCTGCTCCCGCCGTGCTCGTCGATCTGGCCCGTAATGCTCATAGCGAACATTTGCAATGTACTTGCAGCTCATATCGCATGGATGCGAGGATGTTCGGCCGGTGATCGTACACGAAGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCAGCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGATGAACCCAAACAGGGGGAAATGAGCAGCAACGCCCACGACGCTGTAGCCTCGG]
consensusID : consensus_5986#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[CCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAGATGGGGAATCCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACACGAAGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCGCAAAAGTGGTACACATACTCCCAGGAGGTCCACGAGATGATGAACCCAAACAGGGGGAAATTGATAACCTCGGGG]
[-] EMBL AL932612 [CCGGGACATTAGCTCGTGCTTGAGCAGATGATCGCCAACGATCGAGAACACGTACGCAAACAGCATACGGCAGAGATGGGGAATCCCGGACAGCAAGCCCGTCATCTCGATGTTCCACCCGTGCACGTTGTTGAAGTACGTCGGTGCCTGCGTCATCAGCGTAAACAGACCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGAGAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCTGTCGACTGGGCCGTAATGCCAAGCGAACTTTCAATGTACTTGCGCTCATTCGCATGGATGCGAGGATGTTCGGCCGGTGAGTCGTACACGAAGTAGAGCCAGGCGACATACCACACCGTGCCGAAGATGCCGCAAAAGTGGTACACATACTCCCAGGAGGTCCACGAGATGATGAACCCAAACAGGGGGAAATTGATAACCTCGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5986#0 TTATTAACAACTTTGGCACAGAATTGCAGGGAAATGAGCGTATCACACTAATACTGTCGC 60
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 TCAGACCGAGCTTAAGCGAAGGGCAGCAGAATCGTCCTCCTTTTGGTCGTCCGCTTCTTG 120
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 CTTCTCCGGGAACGTTGCGTTGGGCGGCGATATCTTAAGTCCCTTCAGCTCATCATCATG 180
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 CACACTGGACAAATCCTCGCACGAATTCCAAGGCTGCAGTGTCGAGTCGGCGAACGCATA 240
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 AAGAGCAGCCCGCAGATGATGAGCGTCCCGGAAGTGATGAGGAAAATGATTCTCCATTGC 300
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 TCCACCGTGTGATTCCCAAGCATTCCGACAATGATTGGAGACACGAATCCCGGCACAACG 360
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ------------------------------------------------------------
consensus_5986#0 GTGATCATACCGCTGAAACCCAACAGTATGCCCGCATACCGGGGACTCATGTCGA-CTAG 419
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 -----------------------------CCCTGCATACCGGGGACTCATGTCGNANTAG 31
consensus_5986#0 ATTCGCCAGCGGACCAGTGGA--TACCGCCCCATGCACCGTG-GTGGCTAGCGTAAGGAA 476
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ATTCGCNAGCGGACCAGTTGTATTCCTNNGTCATGCACNCTGTGTGGNTAGCGTAAGGTA 91
consensus_5986#0 A-ATGGTGGCCATGAGCGAATT-GCAGCCACTGGACGCG-AGGATAAA--CACGAATATC 531
consensus_5986#2 ------------------------------------------------------------
consensus_5986#1 ATATGGTGCCAATGAGCGAATTTGCANGCCACTGACGCGTAGGATAATACTACGAATATC 151
consensus_5986#0 CCATTC--ACGACGCAGCA-TAGGGTGCCGCCCATC-TTGCGCACCCCCGT----CCGGG 583
consensus_5986#2 -------------------------------------------------------CCGGG 5
consensus_5986#1 CCAATTCAACGACGCAGCAATAGGGTGCCGCCCATCGTTGCGCACCTNCNCGGTCCCGGN 211
****
consensus_5986#0 ACATTA---GCTC-GTG-CTTGAGCA-GATGATC-GCCAA--CGATCGAG----AACACG 630
consensus_5986#2 ACATTA---GCTC-GTG-CTTGAGCA-GATGATC-GCCAA--CGATCGAG----AACACG 52
consensus_5986#1 ACAATGTACGCTCCGTGTCTTGACCAAGATGATCCGCCATACCGATCGAGCTACATCGTA 271
*** * **** *** ***** ** ******* **** ******** * *
consensus_5986#0 TACGCAAACA-GCATACGGCAGAGA--TGGGGAATGCCGGA-CAGCAAGCCCGTCA--TC 684
consensus_5986#2 TACGCAAACA-GCATACGGCAGAGA--TGGGGAATCCCGGA-CAGCAAGCCCGTCA--TC 106
consensus_5986#1 NCCGCAAACNAGCATACGNCAGGAGATTGGGAAATGCCGGAACAGCAAGCCCGTCAATTG 331
******* ******* *** **** *** ***** ************** *
consensus_5986#0 TCGATGTTCCACCCGTGCACGTTGTTGAA--GTACGTCGGTGCCT-GCGTCATCA---GC 738
consensus_5986#2 TCGATGTTCCACCCGTGCACGTTGTTGAA--GTACGTCGGTGCCT-GCGTCATCA---GC 160
consensus_5986#1 TCGATGTTCCACCCGTGCACGTTGTTGAAATGTACGTCGGTNCTTTGCGTCATCNAGCGT 391
***************************** ********** * * ******** *
consensus_5986#0 GTAAACAGA-CCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGA 797
consensus_5986#2 GTAAACAGA-CCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGA 219
consensus_5986#1 ATGTACAGATCCCCAGATGCCACCCCACTGGGCAATGATCGTCATCCACATGGCGCGGGA 451
* ***** **************************************************
consensus_5986#0 GAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCT-G 856
consensus_5986#2 GAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCCTGCTGCTGCTGCTCCCGCCGTGCT-G 278
consensus_5986#1 GAGTATGATCTTGCGCCAGGGTGTGCCCTGCTCNTGCTGCTGCTGCTCCCGCCGTGCTCG 511
********************************* ************************ *
consensus_5986#0 TCGA-CTGGGCCGTAATGCCAA--GCGAACTTT--CAATGTACTTGC-GCTCAT-TCGCA 909
consensus_5986#2 TCGA-CTGGGCCGTAATGCCAA--GCGAACTTT--CAATGTACTTGC-GCTCAT-TCGCA 331
consensus_5986#1 TCGATCTGGCCCGTAATGCTCATAGCGAACATTTGCAATGTACTTGCAGCTCATATCGCA 571
**** **** ********* * ****** ** ************ ****** *****
consensus_5986#0 TGGATGCGAGGATGTTCGGCCGGTGAGTCGTACACGA-GTAGAGCCAGGCGACATACCAC 968
consensus_5986#2 TGGATGCGAGGATGTTCGGCCGGTGAGTCGTACACGAAGTAGAGCCAGGCGACATACCAC 391
consensus_5986#1 TGGATGCGAGGATGTTCGGCCGGTGA-TCGTACACGAAGTAGAGCCAGGCGACATACCAC 630
************************** ********** **********************
consensus_5986#0 ACCGTGCCGAAGATGCC-GCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGAT 1027
consensus_5986#2 ACCGTGCCGAAGATGCC-GCAAAAGTGGTACACATACTCCCAGGAGGTCCACGAGATGAT 450
consensus_5986#1 ACCGTGCCGAAGATGCCAGCAAAAGTGGTACACATACTCCCAGGATGTCCACGAGATGAT 690
***************** *************************** **************
consensus_5986#0 GAACCCAAACAGGGGGAAATTGAGCGCAACGCCCACGGAGCTGCCCAGGTAAGCGGTTAC 1087
consensus_5986#2 GAACCCAAACAGGGGGAAATTGA---TAAC-CTCGGGG---------------------- 484
consensus_5986#1 GAACCCAAACAGGGGGAAATGAGCAGCAACGCCCACGACGCTGTAGCCTCGG-------- 742
******************** *** * * *
consensus_5986#0 GAACTTGCTCCGTTCGTTCGGGGGAATCGCACTGCCCAGCCATATGGGCATC 1139
consensus_5986#2 ----------------------------------------------------
consensus_5986#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||