These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 436 fasta sequence [AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTG-GCCAACTG----G--GTCAAATTTGTGTA-CG-CCAAAATA-CGCAACTTCATTGTA-C-CG-TCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG-GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC] [-] EMBL CNS08VRH [AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTGCGCCAACTG G GTCAAATTTGTGTA CG CCAAAATA CGCAACTTCATTGTA C CG TCCGAGTCATTTGGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAAACTGGGCCG GTAACAAGGAGGACGAGGAAGAATTGAGCGTATGGGAGGACCACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCATCTGTCTCGATAACGCCGAAAtt ] [-] EMBL CNS08FEE [ GAACTGTTG GCCTACTGAACAGCTGTCAAATTTGTGTACCGCCCAAAATACCGCAACTTCATTGTAGCGCGCTCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCTACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATTTTAA ] [+] EMBL CNS08FED [ aAAATTTGTGTA CG CCAAAATA CGCAACTTCATTGTA C CG TCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGCGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC] [+] EMBL BM636896 [ ccgAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCCC ] consensusID : consensus_5987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC] [+] EMBL BM654027 [CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5987#0 AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGGTCAAATTTGTGTACGC 60 consensus_5987#1 ------------------------------------------------------------ consensus_5987#0 CAAAATACGCAACTTCATTGTACCGTCCGAATCATTTTGTTGTTTTAATAAAATATTCAC 120 consensus_5987#1 ------------------------------------------------------------ consensus_5987#0 CAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTC 180 consensus_5987#1 CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTC 60 * * * **************************** **************** consensus_5987#0 TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG 240 consensus_5987#1 TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG 120 ************************************************************ consensus_5987#0 ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT 300 consensus_5987#1 ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT 180 ************************************************************ consensus_5987#0 TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT 360 consensus_5987#1 TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT 240 ************************************************************ consensus_5987#0 CTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGC 420 consensus_5987#1 CTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC------------------ 282 *** ************************************ * consensus_5987#0 CACATGTGCCCGAGCC 436 consensus_5987#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||