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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGCTCTAACACAGGTGACATCCATTCAAAATGGTCCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACACGTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCGTTTTTGGAACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGC]
[+] EMBL BM575989 [CCGCGGACGCGTGGGCGGACGCGTGGGGCTCTAACACAGGTGACATCCATTCAAAATGGTCCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACACGTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCGTTTTTGGAACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGC]
consensusID : consensus_5990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGAAATTTGCAGTAGTCTAACACAGGTGACACACATCCAAAATGGTCCAAGGAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAATGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAACACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCTGACGAAGATTTGCAGCAGTCAGCCGCATACACGTACAGCTACTATCGGCCGGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGTTTTCGTTTCGAATGGATTTTAGAGCGCACAAACGACGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCACCAAAACACAAATGCGTCATTCAGAACGTGTATTGCACAATGTGTGTTTATAGAGCAAAAAATAAGTTAGATTACCCTCCCCTTTGTATTTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAACGAGCGAAGCAAATCGTTTATGGAACGAGCAAAAAGCTAGTAGCCCTGCCTGATGGCAATG]
[+] EMBL BM652222 [CCGAAATTTGCAGTAGTCTAACACAGGTGACACACATCCAAAATGGTCCAAGGAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAATGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAACACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCTGACGAAGATTTGCAGCAGTCAGCCGCATACACGTACAGCTACTATCGGCCGGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGTTTTCGTTTCGAATGGATTTTAGAGCGCACAAACGACGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCACCAAAACACAAATGCGTCATTCAGAACGTGTATTGCACAATGTGTGTTTATAGAGCAAAAAATAAGTTAGATTACCCTCCCCTTTGTATTTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAACGAGCGAAGCAAATCGTTTATGGAACGAGCAAAAAGCTAGTAGCCCTGCCTGATGGCAATG]
consensusID : consensus_5990#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 679 fasta sequence
[CCGCCCACGCGTCCGAGGTGACATCCATTCAAAATGGTCCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACACGTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCGTTTTTTGGAACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGCAATGATTACTTCGATTT]
[+] EMBL BM648928 [CCGCCCACGCGTCCGAGGTGACATCCATTCAAAATGGTCCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACACGTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCGTTTTTTGGAACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGCAATGATTACTTCGATTT]
[+] EMBL BX614174 [ cGCTGACCATCGCGTGCAGTGCCACTCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACCACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCATCACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACACGTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTATCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAATGGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGAAATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCG ]
[+] EMBL BX615366 [ ACGAAGAACAATCTAAGGGCAGTTGAAAGGTTATTAAACGAAACAAACCGCCAAAACACAAAGGCGTCATTAAGAACGTGTATGGCACAATATGTGTTTATAGAGCAAAAAATAAGTTAGAACACTCTCCCCTTTGTATTGGAGACACGGAACTGTTGCAGAACAAATCAAGCAAGCGAAGCAAATCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5990#0 CCGCGGACGCGTGGGCGGACGCGTGGGGCTCTAACACAGGTGACATCCATTCAAAATGGT 60
consensus_5990#2 ------------------CCGCCCACGCGTCCGA----GGTGACATCCATTCAAAATGGT 38
consensus_5990#1 -------------CCGAAATTTGCAGTAGTCTAACACAGGTGACACACATCCAAAATGGT 47
** * ******* *** *********
consensus_5990#0 CCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCAC 120
consensus_5990#2 CCAAGCAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAGTGCCAC 98
consensus_5990#1 CCAAGGAATGCATCATCTCTTTATCTTAATTTATCTGCTGACCATCGCGTGCAATGCCAC 107
***** *********************************************** ******
consensus_5990#0 TCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACC 180
consensus_5990#2 TCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACC 158
consensus_5990#1 TCTCGAGCAGCCGATCGAACAGCAGACACAGTTGGCCGAGACAGAAAAGGACCCAATACC 167
************************************************************
consensus_5990#0 ACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCAT 240
consensus_5990#2 ACCGATCTACAATACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCAT 218
consensus_5990#1 ACCGATCTACAACACACCGCCCCAACCACCGGTCAAGATACTGCGCGAAACCAGCCCCAT 227
************ ***********************************************
consensus_5990#0 CACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACAC 300
consensus_5990#2 CACGCAGCGGGAAAGCATGCCAATGTCCGACGAAGATTTGCAGCAGTCAGCCGCGTACAC 278
consensus_5990#1 CACGCAGCGGGAAAGCATGCCAATGTCTGACGAAGATTTGCAGCAGTCAGCCGCATACAC 287
*************************** ************************** *****
consensus_5990#0 GTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTA 360
consensus_5990#2 GTACAGCTACTATCGGCCAGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTA 338
consensus_5990#1 GTACAGCTACTATCGGCCGGTGTACCACCCGGGCGTATACTACTCCTACTACCCACGGTA 347
****************** *****************************************
consensus_5990#0 TCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAAT 420
consensus_5990#2 TCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAAT 398
consensus_5990#1 TCGTTGGTACAGACCGTACTACTACTACCACAACTGGTGGTATTATTGATTTGCGGAAAT 407
************************************************************
consensus_5990#0 GGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGA 480
consensus_5990#2 GGGTTTCGTTTCGAATGGATTTTGGAGCGCACAAACGAAGAACAATCTAATGGCAGTTGA 458
consensus_5990#1 GGTTTTCGTTTCGAATGGATTTTAGAGCGCACAAACGACGAACAATCTAATGGCAGTTGA 467
** ******************** ************** *********************
consensus_5990#0 AATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGC 540
consensus_5990#2 AATGTTATTAAACGAAACAAACCGCCAAAACACAAATGCGTCATTAAGAACGTGTATTGC 518
consensus_5990#1 AATGTTATTAAACGAAACAAACCACCAAAACACAAATGCGTCATTCAGAACGTGTATTGC 527
*********************** ********************* **************
consensus_5990#0 ACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATT-GGAGA 599
consensus_5990#2 ACAATATGTGTTTATAGAGCAAAAAATAAGTTAGATCACTCTCCCCTTTGTATT-GGAGA 577
consensus_5990#1 ACAATGTGTGTTTATAGAGCAAAAAATAAGTTAGATTACCCTCCCCTTTGTATTTGGAGA 587
***** ****************************** ** ************** *****
consensus_5990#0 CACGGAACTGTTGCAGAACAAATCAAGCAAGCGAA--------GCAAATCGTTTTT-GGA 650
consensus_5990#2 CACGGAACTGTTGCAGAACAAATCAAGCAAGCGAA--------GCAAATCGTTTTTTGGA 629
consensus_5990#1 CACGGAACTGTTGCAGAACAAATCAAGCAAGCGAACGAGCGAAGCAAATCGTTTAT-GGA 646
*********************************** *********** * ***
consensus_5990#0 ACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGC----------------- 683
consensus_5990#2 ACGAGCAAAAAGCTAGCAGCCCTGTCTAATGGCAATGATTACTTCGATTT 679
consensus_5990#1 ACGAGCAAAAAGCTAGTAGCCCTGCCTGATGGCAATG------------- 683
**************** ******* ** *****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||