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Anopheles gambiae
cluster # 5991 cluster # 5991       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5991#0 length = 1243 sequences # 4  
consensus_5991#1 length = 584 sequences # 1  

consensusID : consensus_5991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1243
fasta sequence
                              [GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG]

[+] EMBL BX625200             [GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACNACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX622622             [                                                    AGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX613632             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG]
[+] EMBL BX608078             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATACACGAAGCTCATGGAGGCTGTCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAAGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGG                                                                                                                                                                                                                                                                       ]


>consensus_5991#0 GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGC CCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTA CAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACA AAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCC AATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGT GGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCA CCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGT CGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTT ACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTT TTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACT CACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATAC ACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATG AGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACA ACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG CTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA CAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG



consensusID : consensus_5991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence
                              [CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT]

[+] EMBL BM612751             [CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT]


>consensus_5991#1 CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGA TGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAA CGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGG GATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTG TCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTA CATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAA TCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGC TACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGT AGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAA TAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5991#0      GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGC 60
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      CCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTA 120
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      CAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACA 180
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      AAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCC 240
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      AATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGT 300
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      GGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCA 360
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      CCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGT 420
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      CGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTT 480
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      ACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTT 540
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      TTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACT 600
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      CACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATAC 660
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      ACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATG 720
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      AGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACA 780
consensus_5991#1      ------------------------------------------------------------
                                                                                  

consensus_5991#0      ACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 840
consensus_5991#1      -CCGCCCACGCGTCCGG-------TGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 52
                       *  *    * ** ***       ************************************

consensus_5991#0      GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 900
consensus_5991#1      GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 112
                      ************************************************************

consensus_5991#0      CTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 960
consensus_5991#1      CTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 172
                      ************************** *********************************

consensus_5991#0      CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 1020
consensus_5991#1      CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 232
                      ************************************************************

consensus_5991#0      CAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 1080
consensus_5991#1      CAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 292
                      *********** ************************************************

consensus_5991#0      AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 1140
consensus_5991#1      AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 352
                      ************************************************************

consensus_5991#0      AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 1200
consensus_5991#1      AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 412
                      ************************************************************

consensus_5991#0      TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG----------------- 1243
consensus_5991#1      TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAG 472
                      *******************************************                 

consensus_5991#0      ------------------------------------------------------------
consensus_5991#1      TAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGT 532
                                                                                  

consensus_5991#0      ----------------------------------------------------
consensus_5991#1      GTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT 584
                                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)