These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1243 fasta sequence [GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG] [+] EMBL BX625200 [GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACNACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAA ] [+] EMBL BX622622 [ AGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTG ] [+] EMBL BX613632 [ ATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG] [+] EMBL BX608078 [ ATACACGAAGCTCATGGAGGCTGTCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAAGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGG ] consensusID : consensus_5991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT] [+] EMBL BM612751 [CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5991#0 GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGC 60 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 CCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTA 120 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 CAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACA 180 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 AAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCC 240 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 AATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGT 300 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 GGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCA 360 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 CCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGT 420 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 CGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTT 480 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 ACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTT 540 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 TTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACT 600 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 CACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATAC 660 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 ACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATG 720 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 AGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACA 780 consensus_5991#1 ------------------------------------------------------------ consensus_5991#0 ACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 840 consensus_5991#1 -CCGCCCACGCGTCCGG-------TGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 52 * * * ** *** ************************************ consensus_5991#0 GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 900 consensus_5991#1 GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 112 ************************************************************ consensus_5991#0 CTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 960 consensus_5991#1 CTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 172 ************************** ********************************* consensus_5991#0 CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 1020 consensus_5991#1 CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 232 ************************************************************ consensus_5991#0 CAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 1080 consensus_5991#1 CAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 292 *********** ************************************************ consensus_5991#0 AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 1140 consensus_5991#1 AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 352 ************************************************************ consensus_5991#0 AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 1200 consensus_5991#1 AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 412 ************************************************************ consensus_5991#0 TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG----------------- 1243 consensus_5991#1 TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAG 472 ******************************************* consensus_5991#0 ------------------------------------------------------------ consensus_5991#1 TAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGT 532 consensus_5991#0 ---------------------------------------------------- consensus_5991#1 GTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT 584 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||