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Anopheles gambiae
cluster # 5993 cluster # 5993       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5993#0 length = 1254 sequences # 4  
consensus_5993#1 length = 194 sequences # 1  

consensusID : consensus_5993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1254
fasta sequence
                              [CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC]

[+] EMBL BM597070             [CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM649276             [  ccgAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCAC   CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACAGCCAGCGGCGCTTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM575985             [                                                                                                                                               ccgGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX603440             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTTTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC]


>consensus_5993#0 CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATT CCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTA AACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGT GTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGAT GAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTG ACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATA CCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGC ATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACA GAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGT TGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTT TACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTT TTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGA TCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGC ATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATC GGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATC GAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGT TTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACT GTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAA AGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTT ATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCG GGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC



consensusID : consensus_5993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence
                              [CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG]

[+] EMBL BM615120             [CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG]


>consensus_5993#1 CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGC TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA AGTAAGTTTTTTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5993#0      -----------CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGC 49
consensus_5993#1      CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGC 60
                                  * ****************** ***************************

consensus_5993#0      TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 109
consensus_5993#1      TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 120
                      ************************************************************

consensus_5993#0      GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 169
consensus_5993#1      GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 180
                      ************************************************************

consensus_5993#0      ACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAA 229
consensus_5993#1      AG----TAAGTTTTTTTG------------------------------------------ 194
                      *     *  ** ***  *                                          

consensus_5993#0      TCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGT 289
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTA 349
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTT 409
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGG 469
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGA 529
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCT 589
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      GTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCG 649
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      CAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATG 709
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      ATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACC 769
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      GGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGT 829
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      GCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCC 889
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCA 949
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      CCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCG 1009
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      GGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCA 1069
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCA 1129
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      TCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACC 1189
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      AATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTAC 1249
consensus_5993#1      ------------------------------------------------------------
                                                                                  

consensus_5993#0      CATGC 1254
consensus_5993#1      -----
                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)