These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1254 fasta sequence [CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC] [+] EMBL BM597070 [CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCAC ] [+] EMBL BM649276 [ ccgAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCAC CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACAGCCAGCGGCGCTTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGG ] [+] EMBL BM575985 [ ccgGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGG ] [+] EMBL BX603440 [ AAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTTTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC] consensusID : consensus_5993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG] [+] EMBL BM615120 [CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5993#0 -----------CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGC 49 consensus_5993#1 CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGC 60 * ****************** *************************** consensus_5993#0 TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 109 consensus_5993#1 TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 120 ************************************************************ consensus_5993#0 GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 169 consensus_5993#1 GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 180 ************************************************************ consensus_5993#0 ACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAA 229 consensus_5993#1 AG----TAAGTTTTTTTG------------------------------------------ 194 * * ** *** * consensus_5993#0 TCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGT 289 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTA 349 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTT 409 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGG 469 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGA 529 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCT 589 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 GTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCG 649 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 CAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATG 709 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 ATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACC 769 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 GGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGT 829 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 GCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCC 889 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCA 949 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 CCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCG 1009 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 GGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCA 1069 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCA 1129 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACC 1189 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTAC 1249 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 CATGC 1254 consensus_5993#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||