These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1238 fasta sequence [TTGGAAGTTTGTTTACATCTGTGATTCGTTTTTCGGTGAATTGTACCAAAATCTCAAACGGTACAATCATCGCTCGTTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGATGTTCAGTCTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAATGAACTGAAAACAAAACTCCAATCAATTTTACTTGCGGCACTAAACCTGGCACTAATAACCCGAACGAGATGCGTATGCCGTGACAAGATGTTTTAAGTGGGGAATCAAATTTAGCAATACCAACCATTTGGCACTGGCACTGCAGAATATATACCCCCTCTTCACCACATCACCGTCCCGTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCA-CCCATTGCCAAGCAATGCCAGTTA-CCATGAGGCGTGGCGCCACCTGCGAGATACGGTACCGATTACGCCGAGCCCGGCGCTTAACCATC-GGGCCACGCGCAATCATCGCGGTCACGCCGTACACTTTTCGATGGGAGTGTACGAAAATGAGTCGCCAACGAAAGCTTCCCACTGCTATTCACCGTACGGCCGGATGCGCCCCTACTTTATACCTCACCGAACGCGCACGAAAAGCGAAAGCTCGGGATCCAACGAACCACTCCGAGCTAGCCGGGCAGGACAGTGCAGACAATCATCCGTCGGCGTCCACCAGCCATGCCGGGATCGCAACGACAC-TGATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTGCGGTACAGCCGGAATCCGATCGTTCTGCTGAAAAAGTCCCGCTCGCTGGAGAACGTGCGCGTGGACAACTCGCTCGACGGGTCGCAGGTTTCGCACGAGATGGAGTTCGTATCGAGCCGCATACAGAAGCTTAAGGTACAGGAGTGATGAGGACGGATGGGATAACATGAACTCAGTGATTAGTTTTTTACTTTGCTGATATTTTAACGTTTACGTGAATGGGGGTGAATGGGATTACAGAATTTTTCGGTGTGTTGCGTTACGTAAAGCTCTACTGTAAGCCGTTTTACAACTATGCTATGAATTATACTATGAATACATTTCCATGGAAATAAGAAAAA] [+] EMBL CNS09ALD [TTGGAAGTTTGTTTACATCTGTGATTCGTTTTTCGGTGAATTGTACCAAAATCTCAAACGGTACAATCATCGCTCGTTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGATGTTCAGTCTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAATGAACTGAAAACAAAACTCCAATCAATTTTACTTGCGGCACTAAACCTGGCACTAATAACCCGAACGAGATGCGTATGCCGTGACAAGATGTTTTAAGTGGGGAATCAAATTTAGCAATACCAACCATTTGGCACTGGCACTGCAGAATATATACCCCCTCTTCACCACATCACCGTCCCGTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCA CCCATTGCCAAGCAATGCCAGTTA CCATGAGGCGTGGCGCCACCTGCGAGATACGGTACCGATTACGCCGAGCCCGGCGCTTAACCATC GGGCCACGCGCAATCATCGCGGTCACGCCGTACACTTTTCGATGGGAGTTTACGAAAATGAGTTGCCAACGAAAGCTTCCCACTGCTATTCACCGTACGGCCGGATGCGCCCCTACTTTATACCTCACCGAACGCGCACGAAAAGCGAAAGCTCGAGATCCAACGAACCACTCCGAGCTAGCCGGGCAGGACAGTTCAGACAATCATCCGTCGGCGTCCACCAGCCATGCCGGGATCGCAACGACAC TTATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTTCGGTACAAAAAGAATCC ] [+] EMBL CNS09NSZ [ TTGTTTACATCTGTGATTCGTTTTTCGGTGAATTGTACCAAAATCTCAAACGGTACAATCATCGCTCGTTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGATGTTCAGTCTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAATGAACTGAAAACAAAACTCCAATCAATTTTACTTGCGGCACTAAACCTGGCACTAATAACCCGAACGAGATGCGTATGCCGTGACAAGATGTTTTAAGTGGGGAATCAAATTTAGCAATACCAACCATTTGGCACTGGCACTGCAGAA ATATACCCCCTCTTCACCACATCACCGTCCCGTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCA CCCATTGCCAAGCAATGCCAGTTA CCATGAGGCGTGGCGCCACCTGCGAGATACGGTACCGATTACGCCGAGCCCGGCGCTTAACCATCGGGGCCACGCGCAATCATCGCGGTCACGCGGTACACTTTTCGATGGGAGTGTACGAAAATGAGTCGCCAACGAAAGCTTCCCACTGCTATTCACCGTACGGCCGGATGCGCCCCTACTTTATACCTCACCGAACGCGCACGAAAAGCGAAA CTCGGGATCCAACGAACCACTCCGAGCTAGCCGGGCAGGACAGTGCAGACAATCATCCGTCGGCGTCCACCAGCCATGCCGGGATCGCAACGACAC TGATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTGCGGTACAGCCGGAATCCGATCGTTCTGCT ] [-] EMBL CNS09NT0 [ CCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCACCCCATTGCCAAGCAATGCCAGTTACCCATGAGGCGTGGCGCCACCTGCGAGATACGGTACCGATTACGCCGAGCCCGGCGCTTAACCATC GGGCCACGCGCAATCATCGCGGTCACGCCGTACACTTTTCGATGGGAGTGTACGAAAATGAGTCGCCAACGAAAGCTTCCCACTGCTATTCACCGTACGGCCGGATGCGCCCCTACTTTATACCTCACCGAACGCGCACGAAAAGCGAAAGCTC GGATCCAACGAACCACTCCGAGCTAGCCGGGCAGGACAGTGCAGACAATCATCCGTCGGCGTCCACCAGCCATGCCGGGATCGCAACGACAC TGATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTGCGGTACAGCCGGAATCCGATCGTTCTGCTGAAAAAGTCCCGCTCGCTGGAGAACGTGCGCGTGGACAACTCGCTCGACGGGTCGCAGGTTTCGCACGAGATGGAGTTCGTATCGAGCCGCATACAGAAGCTTAAGGTACAGGAGTGATGAGGACGGATGGGATAACATGAACTCAGTGATTAGTTTTTTACTTTGCTGATATTTTAACGTTTACGTGAATGGGGGTGAATGGGATTACAGAATTTTTCGGTGTGTTGCGTTACGTAAAGCTCTACTGTAAGCCGTTTTACAACTATGCTATGAATTATACTATGAATACATTTCCATGGAAATAAGA ] [-] EMBL CNS09ALE [ CCATGCCGGGATCGAAACGAAACATGATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTGCGGTACAGCCGGAATCCGATCGTTCTGCTGAAAAAGTCCCGCTCGCTGGAGAACGTGCGCGTGGACAACTCGCTCGACGGGTCGCAGGTGTCGCACGAGATGGAGTTCGTATCGAGCCGCATACAGAAGCTTAAGGTACAGGAGTGATGAGGACGGATGGGATAACATGAACTCAGTGATTAGTTTTTTACTTTGCTGATATTTTAACGTTTACGTGAATGGGGGTGAATGGGATTACAGAATTTTTCGGTGTGTTGCGTTACGTAAAGCTCTACTGTAAGCCGTTTTACAACTATGCTATGAATTATACTATGAATACATTTCCAT GAATTAAGAAAAA] consensusID : consensus_6007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [AGAATCGCCCGAGGTGAATGTACCAAAATCTCAAACGGTACAATCATCGCTCGTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGATGTTCAGTTTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAATGAACTGAAAACAAAACTCCAATCAATTATACTTGCGGCACTAAACCTGGCACTAATAACCCGAAAGAGATGCGTATGCCGTGACAAGATGTTTTAAGCGTGGAATCAAATTTAGCAATACCAACCATTTGGCACTGGCACTGCAGAAATATACCCCCTCTTCACCACATCACCGTCCCGTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCACCCATTGCCAAGCAATGCCAGTTACCATGAGGCGTGGC] [+] EMBL AL930300 [AGAATCGCCCGAGGTGAATGTACCAAAATCTCAAACGGTACAATCATCGCTCGTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGATGTTCAGTTTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAATGAACTGAAAACAAAACTCCAATCAATTATACTTGCGGCACTAAACCTGGCACTAATAACCCGAAAGAGATGCGTATGCCGTGACAAGATGTTTTAAGCGTGGAATCAAATTTAGCAATACCAACCATTTGGCACTGGCACTGCAGAAATATACCCCCTCTTCACCACATCACCGTCCCGTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCGAACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGCGCGGGCAGCCCTTTACCTTTCACCCATTGCCAAGCAATGCCAGTTACCATGAGGCGTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6007#0 TTGGAAGTTTGTTTACATCTGTGATTCGTTTTTCGGTGAATTGTACCAAAATCTCAAACG 60 consensus_6007#1 ---------------------AGAATCGCCCGA-GGTGAAT-GTACCAAAATCTCAAACG 37 ** *** ******* ****************** consensus_6007#0 GTACAATCATCGCTCGTTAAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGA 120 consensus_6007#1 GTACAATCATCGCTCGT-AAAACTGATTACTAATAAAATCGCGCATTGGATTGCCTAGGA 96 ***************** ****************************************** consensus_6007#0 TGTTCAGTCTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAA 180 consensus_6007#1 TGTTCAGTTTCCCAATCGCATCCGGTACGTTGCCCTTCAGGACGAGCAACGATTCAGCAA 156 ******** *************************************************** consensus_6007#0 TGAACTGAAAACAAAACTCCAATCAATTTTACTTGCGGCACTAAACCTGGCACTAATAAC 240 consensus_6007#1 TGAACTGAAAACAAAACTCCAATCAATTATACTTGCGGCACTAAACCTGGCACTAATAAC 216 **************************** ******************************* consensus_6007#0 CCGAACGAGATGCGTATGCCGTGACAAGATGTTTTAAGTGGGGAATCAAATTTAGCAATA 300 consensus_6007#1 CCGAAAGAGATGCGTATGCCGTGACAAGATGTTTTAAGCGTGGAATCAAATTTAGCAATA 276 ***** ******************************** * ******************* consensus_6007#0 CCAACCATTTGGCACTGGCACTGCAGAATATATACCCCCTCTTCACCACATCACCGTCCC 360 consensus_6007#1 CCAACCATTTGGCACTGGCACTGCAGAA-ATATACCCCCTCTTCACCACATCACCGTCCC 335 **************************** ******************************* consensus_6007#0 GTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCG 420 consensus_6007#1 GTTGTTAAGACCTAACAATGCAAACCCCAACCGCCGAAAGCAGCGTGCCGGCTGCGGCCG 395 ************************************************************ consensus_6007#0 AACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGC 480 consensus_6007#1 AACTGAACCCGATGTGCCAAACGAAGCAGGAAGTGGACCCTACCAAAGACACCGAACGGC 455 ************************************************************ consensus_6007#0 GCGGGCAGCCCTTTACCTTTCACCCATTGCCAAGCAATGCCAGTTACCATGAGGCGTGGC 540 consensus_6007#1 GCGGGCAGCCCTTTACCTTTCACCCATTGCCAAGCAATGCCAGTTACCATGAGGCGTGGC 515 ************************************************************ consensus_6007#0 GCCACCTGCGAGATACGGTACCGATTACGCCGAGCCCGGCGCTTAACCATCGGGCCACGC 600 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 GCAATCATCGCGGTCACGCCGTACACTTTTCGATGGGAGTGTACGAAAATGAGTCGCCAA 660 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 CGAAAGCTTCCCACTGCTATTCACCGTACGGCCGGATGCGCCCCTACTTTATACCTCACC 720 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 GAACGCGCACGAAAAGCGAAAGCTCGGGATCCAACGAACCACTCCGAGCTAGCCGGGCAG 780 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 GACAGTGCAGACAATCATCCGTCGGCGTCCACCAGCCATGCCGGGATCGCAACGACACTG 840 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 ATGGAAACGTGCGAACACTCCACGCCGATGATGGATGACGTATCGATCAATGCAGTGCGG 900 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 TACAGCCGGAATCCGATCGTTCTGCTGAAAAAGTCCCGCTCGCTGGAGAACGTGCGCGTG 960 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 GACAACTCGCTCGACGGGTCGCAGGTTTCGCACGAGATGGAGTTCGTATCGAGCCGCATA 1020 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 CAGAAGCTTAAGGTACAGGAGTGATGAGGACGGATGGGATAACATGAACTCAGTGATTAG 1080 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 TTTTTTACTTTGCTGATATTTTAACGTTTACGTGAATGGGGGTGAATGGGATTACAGAAT 1140 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 TTTTCGGTGTGTTGCGTTACGTAAAGCTCTACTGTAAGCCGTTTTACAACTATGCTATGA 1200 consensus_6007#1 ------------------------------------------------------------ consensus_6007#0 ATTATACTATGAATACATTTCCATGGAAATAAGAAAAA 1238 consensus_6007#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||