These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 914 fasta sequence [CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAGTTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAGTTACCGAAATAGCGGAGGAACGATTGTTTGGATACCACGCGTGGGTTGGTATCGAAAGCGAAAACTAAGCAGTGTGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCACCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATCACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTAC-AAACTTGGTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTGGTACGGCAATGGGACGAAAGGAACGGCCGATGTGCAACCGCACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCGATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATGCCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCATCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGC] [+] EMBL BM602888 [CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAGTTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAGTTACCGAAATAGCGGAGGAACGATTGTTTGGATACCACGCGTGGGTTGGTATCGAAAGCGAAAACTAAGCAGTGTGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCACCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATCACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTAC AAACTTGGTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTGGTACGGCAATGGGACGAAAGGAACGGCCGATGTGCAACCGCACCAGCGTCCC ] [+] EMBL BM577298 [ ccgCACCGCAAACACGCACGCCGTCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATTACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTACGAAAATT GTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGTATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAATCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGAAAAATGGTACGGCAATGGGACGAAAGGAACGGCCAATGTGCAACCGCACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCGATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATGCCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCATCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGC] consensusID : consensus_6008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 860 fasta sequence [CCGAGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGCGTCCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTCGCATACGTTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTAGACAGCAGCATTCCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCTCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCTGTGTGCCCGCTTCGTTCCGTAAAGTGCCTCCATGAGCTCTAGTATGAAACGCAGGGCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTTTTGGAACTGTGCAATCCATTTACATCAACCATCGTGGCGTACACCGCATTACTCGTTTATCTTATTTATTTCTATCTATTTTTTTTACTAAATATTACCCTTTAACATTTCGTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTTTATTTTAGTCTACGTTAGAAAAT] [+] EMBL BM585556 [CCGAGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGCGTCCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTCGCATACGTTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTAGACAGCAGCATTCCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCTCTGCTGAGCGGCGTGGTTGGATTC ] [+] EMBL BX621993 [ AATAACCTCGGTTTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTGTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCTCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGTATCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTACGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCTGTGTGCCCGCTTCGTTCCGTAAAGTGCCTCCATGAGCTCTAGTATGAAACGCAGGGCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTTTTGGAACTGTGCAATCCATTTACATCAACCATCGTGGCGTACACCGCATTACTCGTTTATCTTATTTATTTCTATCTATTTTTTTTACTAAATATTACCCTTTAACATTTCGTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTTTATTTTAGTCTACGTTAGAAAAT] consensusID : consensus_6008#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CCGCCCACGCGTCCGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTTTCGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCTGTGTGCCCGCATCGCTCCGTAAAGT] [+] EMBL BM644556 [CCGCCCACGCGTCCGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTTTCGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCTGTGTGCCCGCATCGCTCCGTAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6008#1 -----------------------------CCGAGGTTGC--ATGTGTAGTCATC-TAATC 28 consensus_6008#2 ------------------------------------------------------------ consensus_6008#0 CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAG 60 consensus_6008#1 TTGTGCCTTTATAAAT-AACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGT 87 consensus_6008#2 --------------CC-GCCCACGCGTCCGGTTGCATGTGTA-GTCATCTAATCTTGTGC 44 consensus_6008#0 TTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAG 120 * ** * * * consensus_6008#1 TTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTC 147 consensus_6008#2 CTTTATAAATA-----ACCTCGGTT---TCGAATCATACCGAACGATCGGTTCCCGAGTC 96 consensus_6008#0 TTACCGAAATAGCGGAGGAACGATT-GTTTGGATACCACGCGTGGGTTGGTATCGAAAGC 179 * * *** * * ** ** * * *** * * * consensus_6008#1 GTC------GCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACC-CGCGT 200 consensus_6008#2 GTC------GCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACC-CGTGT 149 consensus_6008#0 GAAAACTAAGCAGTG-TGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCA 238 * ****** ** ** ** *** * *** ** *** * consensus_6008#1 CCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTC 260 consensus_6008#2 CCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTC 209 consensus_6008#0 CCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCG--AGCGCATC 296 *** * * * ** * * **** * * * ** consensus_6008#1 GCATACG--TTGTATGCGGTCGCTTTCGGGCTGCTGC--TTTCGTCGTTTACCTGGTACA 316 consensus_6008#2 GCATACG--CTGTATGCGGTCGCTTTCGGGCTGCTGC--TTTCGTCGTTTACCTGGTACA 265 consensus_6008#0 ACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTACAAACTTGGTTCC 356 ***** *** *** ** * * * * ** *** * ** **** * consensus_6008#1 TCATCTACCTAGACAGCAGCATT-CCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCG 375 consensus_6008#2 TCATCTACCTGGACAGCAGCATT-CCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCG 324 consensus_6008#0 AATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAA-ACAGCCAATTTGA 415 ** * ** * * * ** ***** * *** * * * consensus_6008#1 AAGA-AACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTT-CACCTACCCTACA 433 consensus_6008#2 AAGA-AGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTT-CACCTACCCTACA 382 consensus_6008#0 AGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACA 475 * * * * * * * * ** * * * * ** * ** *** consensus_6008#1 TAA--CGGCTCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTA 491 consensus_6008#2 TAA--CGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTA 440 consensus_6008#0 GCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTG-GTACGGCAATGGGACGAA 534 * **** * * ** * ** ****** * * * consensus_6008#1 GGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCT 551 consensus_6008#2 GGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCT 500 consensus_6008#0 AGGAACGGCCGATGTGCAACCG-CACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCG 593 ** *** ** * * * * ******* * * * * ** consensus_6008#1 GTGTGCC-CGCTTCGTTCCGTAAAGTGCCTCCA----TGAGCTCTAGTATGAAACGCAGG 606 consensus_6008#2 GTGTGCC-CGCATCGCTCCGTAAAGT---------------------------------- 525 consensus_6008#0 ATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATG 653 * ** * ** * * * ** consensus_6008#1 GCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTT 666 consensus_6008#2 ------------------------------------------------------------ consensus_6008#0 CCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCA 713 consensus_6008#1 TTGGAACTGTGCAATCCATTTAC-ATCAACCATCGTGGCGTACACCGCATTACTCGTTTA 725 consensus_6008#2 ------------------------------------------------------------ consensus_6008#0 TCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCG 773 consensus_6008#1 TCTTATTTATTTCTA-TCTAT-------TTTTTTTACTAAATATTACCCTTTAACATTTC 777 consensus_6008#2 ------------------------------------------------------------ consensus_6008#0 TCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGC 833 consensus_6008#1 GTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTT 837 consensus_6008#2 ------------------------------------------------------------ consensus_6008#0 CGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGC 893 consensus_6008#1 TATTTTAGTCTACGTTAGAAAAT 860 consensus_6008#2 ----------------------- consensus_6008#0 TGTATGCGGTCGCTTTCGGGC-- 914 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||