These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [GTAACTGAGAGAGAGAGAGAGAGAGAGAGTGTGCGTGTGAACGATATGTTGGCAACCGAAACCCAAGCCTTAGTGGAAACTGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAAGCGTGGCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTAACGCGCAGCAAAGAATATGGCCTTCGGAATTAGTTTCCAAAAAGTAAACCCCACTACCCTACCTTTGATCGAGATCGACATTACGATCGGACCATGAAATGTACAAAACGCCTCCTAACGCGAGCAAACTCTTTTCCGTAAAGAGCTGATCAGCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAAGAGAAGTTTTCTAACAAAAATACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATCTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGGTCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCTCGTGCTTACTTGGTTGGTGGGTCGGGTTGTTGCTAGTGCACCGTTGTGCACCGTTGTGTTGGCATTGGC] [+] EMBL BX627885 [GTAACTGAGAGAGAGAGAGAGAGAGAGAGTGTGCGTGTGAACGATATGTTGGCAACCGAAACCCAAGCCTTAGTGGAAACTGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAAGCGTGGCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTAACGCGCAGCAAAGAATATGGCCTTCGGAATTAGTTTCCAAAAAGTAAACCCCACTACCCTACCTTTGATCGAGATCGACATTACGATCGGACCATGAAATGTACAAAACGCCTCCTAACGCGAGCAAACTCTTTTCCGTAAAGAGCTGATCAGCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAAGAGAAGTTTTCTAACAAAAATACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATCTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGGTCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCTCGTGCTTACTTGGTTGGTGGGTCGGGTTGTTGCTAGTGCACCGTTGTGCACCGTTGTGTTGGCATTGGC] consensusID : consensus_6009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 724 fasta sequence [TGGCAACCGAAACCCAAGCCTTAGTGGAAACCGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAAGCGTGGCACAAGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTTCTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGTTTTCCCCAAAAACACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATCTTTCTTCTCTTCACTCATCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCCCAAAGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCTCGTGCTTACTTGGTTGGTGGTTCGGTTTGTTGCTAGTGCACCGTTGTGCACCGTTGTGTTGGCATTGGCTGCCCAATTGAAAGGNGGTAAAGGCGGTAAAATGAAAGGATTCACGCAAGGACCTGCAGCTAGACAAATAGTAGAACCTGAAAGCATAACCGCGCAT] [+] EMBL BX625219 [TGGCAACCGAAACCCAAGCCTTAGTGGAAACCGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAAGCGTGGCACAAGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTTCTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGTTTTCCCCAAAAACACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATCTTTCTTCTCTTCACTCATCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCCCAAAGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCTCGTGCTTACTTGGTTGGTGGTTCGGTTTGTTGCTAGTGCACCGTTGTGCACCGTTGTGTTGGCATTGGCTGCCCAATTGAAAGGNGGTAAAGGCGGTAAAATGAAAGGATTCACGCAAGGACCTGCAGCTAGACAAATAGTAGAACCTGAAAGCATAACCGCGCAT] [+] EMBL BM582449 [ GAGAAGTTTTCCCCAAAAACACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATCTTTCTTCTCTTCACTCATCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCCCAAAGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCTCGTGCTTACTTGGTTG ] consensusID : consensus_6009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [CCGGAGAATGTGTGTGAACGATATGTTGGCAACCGAAACCCAAGCCTTAGTGGAAACCGCCGCTGAAACTGCTGAACCAAAAGAAGAAAACGTAATGCGTGGCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGTGGTTTTCCTGCGACCGAACGACTCCTCTGCGCATGTAGTGCTTGTTTGGCGCCTTGCTGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTTCTTCGATCGAGATCGACATTCGAACATCGGACCATGAAATGTACAAAACGCATCCTAACGCGAGCGAACTCTCTTCCGTAAGGAGCTAGATAGCTGTTTTTCATGCTCCCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGTTTTCCCCAAAAATACCTGCTAGCAGGACTTCACATTGGATCGGCCTCGCGGTTCTATCCTTCTGTGTACATCTTTCTTCTCTTCACTCATGCTTCTAATTACACTTTCTTCTACTTCGGCCTCTCGGAACGTTTCAAGAGCACCTCGCCTGTGTTCCCTTAGGCTTCTAGCTTGAAAACAAATATTACAAAACACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCGCGTGCTTA] [+] EMBL BM575784 [CCGGAGAATGTGTGTGAACGATATGTTGGCAACCGAAACCCAAGCCTTAGTGGAAACCGCCGCTGAAACTGCTGAACCAAAAGAAGAAAACGTAATGCGTGGCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGTGGTTTTCCTGCGACCGAACGACTCCTCTGCGCATGTAGTGCTTGTTTGGCGCCTTGCTGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTTCTTCGATCGAGATCGACATTCGAACATCGGACCATGAAATGTACAAAACGCATCCTAACGCGAGCGAACTCTCTTCCGTAAGGAGCTAGATAGCTGTTTTTCATGCTCCCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGTTTTCCCCAAAAATACCTGCTAGCAGGACTTCACATTGGATCGGCCTCGCGGTTCTATCCTTCTGTGTACATCTTTCTTCTCTTCACTCATGCTTCTAATTACACTTTCTTCTACTTCGGCCTCTCGGAACGTTTCAAGAGCACCTCGCCTGTGTTCCCTTAGGCTTCTAGCTTGAAAACAAATATTACAAAACACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGTGCGCGTGCTTA] consensusID : consensus_6009#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCGGACGCGTGGGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTACCTTCGATCGAGATCGAGACATTACGATCGGACCATGAAATGTACAAAACCGCCTCCTAACGCGAGCGACCTCTCTTCCGTAAGGAGCTGAACAGCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAAGAGAAGTTTTCCCCAAAAATACCTGCTAGCAGGACTTCATATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATTTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACCAACTCTTGTGCTCGTGCTTACTTGGGTGGGGGGTCGGT] [+] EMBL BM614270 [CCGCGGACGCGTGGGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACGATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGTAGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTTCCAAAAAGTAAAACCCCACTACCCTACCTTCGATCGAGATCGAGACATTACGATCGGACCATGAAATGTACAAAACCGCCTCCTAACGCGAGCGACCTCTCTTCCGTAAGGAGCTGAACAGCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAAGAGAAGTTTTCCCCAAAAATACCTGCTAGCAGGACTTCATATTCGATCGGTCTCGCGTCTCTATCCTTCTGCGGACATTTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGGCCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAACAAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACCAACTCTTGTGCTCGTGCTTACTTGGGTGGGGGGTCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6009#2 -----------------------CCGGAGAATGTGTGTGAACGATATGTTGGCAACCGAA 37 consensus_6009#3 ------------------------------------------------------------ consensus_6009#0 GTAACTGAGAGAGAGAGAGAGAGAGAGAGTGTGCGTGTGAACGATATGTTGGCAACCGAA 60 consensus_6009#1 -------------------------------------------------TGGCAACCGAA 11 consensus_6009#2 ACCCAAGCCTTAGTGGAAACCGCCGCTGAAACTGCTGAA-CCAAAAGAAGAAAACGTAAT 96 consensus_6009#3 ----------------------------------------------------------CC 2 consensus_6009#0 ACCCAAGCCTTAGTGGAAACTGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAA 120 consensus_6009#1 ACCCAAGCCTTAGTGGAAACCGCTGCTGAAACTGCTGAAACCAACAGAAGAAAACGTAAA 71 consensus_6009#2 GCGTG-GCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACG 155 consensus_6009#3 GCGGACGCGTGGGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACG 62 consensus_6009#0 GCGTG-GCACAAGGTGCATTTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACG 179 consensus_6009#1 GCGTG-GCACAAGGTGCAATTTTTCATCGTCCTTTTATGAGAGACACGATCAAAAGCACG 130 *** ** ****** ***************************************** consensus_6009#2 ATGGAAAGGAGGAAGTAAGGAAGTGGTTTTCCTGCGACCGAACGACTCCTCTGCGCATGT 215 consensus_6009#3 ATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGT 122 consensus_6009#0 ATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGT 239 consensus_6009#1 ATGGAAAGGAGGAAGTAAGGAAGCGGTTTTCCTGCGACCGAACGACTCCTCTGCGCAAGT 190 *********************** ********************************* ** consensus_6009#2 AGTGCT---TGTTTGGCGCC-TTGCTGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTT 271 consensus_6009#3 AGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTT 182 consensus_6009#0 AGTACTACTTGTTTGGCGCCGTTAACGCGCAGCAAAGAATATGGCCTTCGGAATTAGTTT 299 consensus_6009#1 AGTACTACTTGTTTGGCGCCGTTGACGCGCAGCAAAGAATATGGCCTTCGGAATTCGTTT 250 *** ** *********** ** ***************************** **** consensus_6009#2 CCAAAAAGTAAAACCCCACTACCCT-TCTTCGATCGAGATCGACATTCGAACATCGGACC 330 consensus_6009#3 CCAAAAAGTAAAACCCCACTACCCTACCTTCGATCGAGATCGAGACATTACGATCGGACC 242 consensus_6009#0 CCAAAAAGTAAA-CCCCACTACCCTACCTTTGATCGAGATCGACATT--ACGATCGGACC 356 consensus_6009#1 CCAAAAAGTAAAACCCCACTACCCT----------------------------------- 275 ************ ************ consensus_6009#2 ATGAAATGTACAAAAC-GCATCCTAACGCGAGCGAACTCTCTTCCGTAAGGAGCTAGATA 389 consensus_6009#3 ATGAAATGTACAAAACCGCCTCCTAACGCGAGCGACCTCTCTTCCGTAAGGAGCTGAACA 302 consensus_6009#0 ATGAAATGTACAAAAC-GCCTCCTAACGCGAGCAAACTCTTTTCCGTAAAGAGCTGATCA 415 consensus_6009#1 ------------------------------------------------------------ consensus_6009#2 GCTGTTTTTCATGCTCCCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGT 449 consensus_6009#3 GCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAA-GAGAAGT 361 consensus_6009#0 GCTGTTTTTCATGCTCTCTTTTTCTTGTCTCTAACCAACAACTGCTAGAAAA-GAGAAGT 474 consensus_6009#1 -------------------TCTTCTTGTCTCTAACCAACAACTGCTAGAAAACGAGAAGT 316 * ******************************* ******* consensus_6009#2 TTTCCC-CAAAAATACCTGCTAGCAGGACTTCACATTGGATCGGCCTCGCGGTTCTATCC 508 consensus_6009#3 TTTCCC-CAAAAATACCTGCTAGCAGGACTTCATATTCGATCGGTCTCGCGTCTCTATCC 420 consensus_6009#0 TTTCTAACAAAAATACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCC 534 consensus_6009#1 TTTCCC-CAAAAACACCTGCTAGCAGGACTTTACATTCGATCGGTCTCGCGTCTCTATCC 375 **** ****** ***************** * *** ****** ****** ******* consensus_6009#2 TTCTGTGTACATCTTTCTTCTCTTCACTCATGCTTCTAATTACACTTTCTTCTACTTCGG 568 consensus_6009#3 TTCTGCGGACATTTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGG 480 consensus_6009#0 TTCTGCGGACATCTTTCTTCTCTTCACTCCTCCTTCTAATTACACTTTCTTCTGCTTCGG 594 consensus_6009#1 TTCTGCGGACATCTTTCTTCTCTTCACTCATCCTTCTAATTACACTTTCTTCTGCTTCGG 435 ***** * **** **************** * ********************* ****** consensus_6009#2 CCTCTCGGAACGTTTCAAGAGCACCTCGCCTGTGTTCCCTTAGGCTTCTAGCTTGAAAAC 628 consensus_6009#3 CCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAAC 540 consensus_6009#0 CCTCTCGGGTCGTTTCAGGAGCTCCTCCCTTGTGTCCTCTTGGGCATCTAGCTTGAAAAC 654 consensus_6009#1 CCTCTCGGATCGTTTCAGGAGCTCCTCCCTTGTGTCCCCAAAGGCATCTAGCTTGAAAAC 495 ******** ******* **** **** * ***** * * *** ************** consensus_6009#2 AAATATTACAAAACACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGT 688 consensus_6009#3 AAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACCAACTCTTGT 600 consensus_6009#0 AAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGT 714 consensus_6009#1 AAATATTACAAATCACTGTTACGAAAATACCTGTTATACCCGAGTTATACAAACTCTTGT 555 ************ ************************************* ********* consensus_6009#2 GCGCGTGCTTA------------------------------------------------- 699 consensus_6009#3 GCTCGTGCTTACTTGGGTGGGGGGTCGGT------------------------------- 629 consensus_6009#0 GCTCGTGCTTACTTGGTTGGTGGGTCGGGTTGTTGCTAGTGCACCGTTGTGCACCGTTGT 774 consensus_6009#1 GCTCGTGCTTACTTGGTTGGTGGTTCGGTTTGTTGCTAGTGCACCGTTGTGCACCGTTGT 615 ** ******** consensus_6009#2 ------------------------------------------------------------ consensus_6009#3 ------------------------------------------------------------ consensus_6009#0 GTTGGCATTGGC------------------------------------------------ 786 consensus_6009#1 GTTGGCATTGGCTGCCCAATTGAAAGGNGGTAAAGGCGGTAAAATGAAAGGATTCACGCA 675 consensus_6009#2 ------------------------------------------------- consensus_6009#3 ------------------------------------------------- consensus_6009#0 ------------------------------------------------- consensus_6009#1 AGGACCTGCAGCTAGACAAATAGTAGAACCTGAAAGCATAACCGCGCAT 724 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||