These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence [AGAATCGCCCCGCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC-TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC--GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA-GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAACCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTCGCCGGGTGCG] [+] EMBL AL930294 [AGAATCGCCCCGAGG TGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACG TCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC ATTTTAACACTAATTCACCAATTCATGTGATTGGTAGTGACCTAAACGGTGGCGAAGGTTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGG ] [+] EMBL BM577043 [ CCGCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAACCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTCGCCGGGTGCG] [+] EMBL BM611042 [ cCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCCTTTTTTTACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAG GTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGATAGCCCCGAAGTAGACAACGAACGCAGTCTCTGTGTGTGTGTGTGTAGTGCGCGGAG ] [+] EMBL BM650029 [ ccgCCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATCCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAA ] consensusID : consensus_6012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGTCGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCGTAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCCGGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGCTTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTAGTGCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG] [+] EMBL BM614007 [CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGTCGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCGTAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCCGGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGCTTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTAGTGCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6012#0 -------------------------------------------AGAATCGCCCCGCGGAC 17 consensus_6012#1 CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGT 60 * * * * * * consensus_6012#0 GAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGA--AACCGCTTTTCAGTCG 75 consensus_6012#1 CGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCG 120 ** * ** * * * * * *** * * * * * * ** ** consensus_6012#0 T-------GTTTGACCCTCCTTTTTACGGC---CTTTTTAACACTAATT-CACCAAT-TC 123 consensus_6012#1 TAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCC 180 * * * * ***** ** *** ** **** * * * * consensus_6012#0 AAGTGATTGG--TAGTGACCTAAACGGTG-GCGAAGATTTTTTTTTTGTTTGG----AGC 176 consensus_6012#1 GGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGC 240 ****** ** * * * ** ***** * ** * * *** consensus_6012#0 ACAAATTATCAT-TACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGG 235 consensus_6012#1 TTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGG 300 * * * * ** ************************************** consensus_6012#0 AAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAA 295 consensus_6012#1 AAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAA 360 ************************************************************ consensus_6012#0 AACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACA 355 consensus_6012#1 AACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACA 420 ************************ *********************************** consensus_6012#0 TTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAAC 415 consensus_6012#1 TTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAAC 480 ************************************************************ consensus_6012#0 AGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTG 475 consensus_6012#1 AGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTG 540 ************************************************************ consensus_6012#0 TGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTGTAGT 535 consensus_6012#1 TGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTG--TAGT 598 ****************************************************** **** consensus_6012#0 GAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGC 595 consensus_6012#1 GCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGC 658 * ********************************************************** consensus_6012#0 CTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAA 655 consensus_6012#1 CTTAGAAGAAAA-CAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG----------- 706 ************ ************************************ consensus_6012#0 CCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTC 715 consensus_6012#1 ------------------------------------------------------------ consensus_6012#0 GCCGGGTGCG 725 consensus_6012#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||