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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence
[AGAATCGCCCCGCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC-TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC--GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA-GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAACCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTCGCCGGGTGCG]
[+] EMBL AL930294 [AGAATCGCCCCGAGG TGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACG TCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC ATTTTAACACTAATTCACCAATTCATGTGATTGGTAGTGACCTAAACGGTGGCGAAGGTTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGG ]
[+] EMBL BM577043 [ CCGCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAACCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTCGCCGGGTGCG]
[+] EMBL BM611042 [ cCGGACGAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGAAACCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCCTTTTTTTACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAG GTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGATAGCCCCGAAGTAGACAACGAACGCAGTCTCTGTGTGTGTGTGTGTAGTGCGCGGAG ]
[+] EMBL BM650029 [ ccgCCGCTTTTCAGTCGTGTTTGACCCTCCTTTTTACGGCC TTTTTAACACTAATTCACCAATTCAAGTGATTGGTAGTGACCTAAACGGTGGCGAAGATTTTTTTTTTGTTTGGAGCACAAATTATCATTACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGC GTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATCCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAA GCAGTCTCTGTGTGTGTGTGTGTAGTGAGCGGAGTGTTTATAAAGTTTTAAA ]
consensusID : consensus_6012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGTCGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCGTAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCCGGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGCTTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTAGTGCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG]
[+] EMBL BM614007 [CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGTCGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCGTAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCCGGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGCTTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGGAAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAAAACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACATTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAACAGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTGTGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTAGTGCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGCCTTAGAAGAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6012#0 -------------------------------------------AGAATCGCCCCGCGGAC 17
consensus_6012#1 CCGGGAGCGGGTCATCCGAGAGCGAGCTCGCGTAGAAAAAGAAAACAACACTGGGTGTGT 60
* * * * * *
consensus_6012#0 GAGCGCGAGCACGTACACGGCACAGCACGCTCGCACGTTCGA--AACCGCTTTTCAGTCG 75
consensus_6012#1 CGTCGTCGGTGTGTGTATAGAATAACGTGCTAAACAGGGAAACCATCTACCATCTAGCCG 120
** * ** * * * * * *** * * * * * * ** **
consensus_6012#0 T-------GTTTGACCCTCCTTTTTACGGC---CTTTTTAACACTAATT-CACCAAT-TC 123
consensus_6012#1 TAGAGAGAGCGTAGTGCCATTTTTTGTGGTTATCTTGTTTGTTTCAATTATAATACTGCC 180
* * * * ***** ** *** ** **** * * * *
consensus_6012#0 AAGTGATTGG--TAGTGACCTAAACGGTG-GCGAAGATTTTTTTTTTGTTTGG----AGC 176
consensus_6012#1 GGGTGATTATACTACTACTGCACGTGATGTGCGAACAACGGGTTCACGATCAAGGATAGC 240
****** ** * * * ** ***** * ** * * ***
consensus_6012#0 ACAAATTATCAT-TACACGACGGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGG 235
consensus_6012#1 TTCTTTCAGTGTGTGCAAACAAGGCCGACAGGATGTAAATCATCATCTCCCCGACATCGG 300
* * * * ** **************************************
consensus_6012#0 AAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAA 295
consensus_6012#1 AAAACAAGGACAAGGTTTCAGTGCGTGTGTGTGTGTGTGGTTGAGTGTGAAGTGAAAGAA 360
************************************************************
consensus_6012#0 AACAGCTGAACAAAACACACCCACCCCCACCCCCAACAAGGACGTGAGCGATCATTCACA 355
consensus_6012#1 AACAGCTGAACAAAACACACCCACTCCCACCCCCAACAAGGACGTGAGCGATCATTCACA 420
************************ ***********************************
consensus_6012#0 TTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAAC 415
consensus_6012#1 TTCCGAGCGTCAAGTGCAGCGAAAAATAATCATCTTTAAACGGAAATATTCCATTCCAAC 480
************************************************************
consensus_6012#0 AGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTG 475
consensus_6012#1 AGGAGTGTGGTTCGAGGGGGTTGAGGCGTGACGTAAATACTACTTGTTGTGGGCCGTGTG 540
************************************************************
consensus_6012#0 TGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTGTGTAGT 535
consensus_6012#1 TGTCACGTGTGACAGCCCCGAAGTAGACAACGAAGCAGTCTCTGTGTGTGTGTG--TAGT 598
****************************************************** ****
consensus_6012#0 GAGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGC 595
consensus_6012#1 GCGCGGAGTGTTTATAAAGTTTTAAAGCTACAAAGCAGCATTTGTTTTGTTGGGTAAAGC 658
* **********************************************************
consensus_6012#0 CTTAGAAGAAAAACAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTGATAGGAGGAAA 655
consensus_6012#1 CTTAGAAGAAAA-CAAGTAAAAAAAGGATAGATTTTCTTGGTGATTGTG----------- 706
************ ************************************
consensus_6012#0 CCAGCAAAACCAACGACAACGACATCAATTTCGCAACCTCCAAAGATGAATCTATCGTTC 715
consensus_6012#1 ------------------------------------------------------------
consensus_6012#0 GCCGGGTGCG 725
consensus_6012#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||