cluster # 6013

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Anopheles gambiae
cluster # 6013 cluster # 6013 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6013#0 length = 679 sequences # 4

consensus_6013#1 length = 578 sequences # 1

consensusID : consensus_6013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 679
fasta sequence

                              [CCGCCCACGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA-GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATATAAAGCAGGGTGGTA]

[+] EMBL BM583219             [CCGCCCACGCGTCCGCAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATATAAAGC         ]
[+] EMBL BM600263             [      cCGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCG                                                                                                                                                                                      ]
[+] EMBL BM642613             [        cCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCA GGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAGGATAT AAGCAGGGTGGTA]
[+] EMBL BM632010             [               ccgTGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCGCACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCATTCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATATCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGATCGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAGTAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATTTACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGGAACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAATGAGTGCAGCTGATTCGAATGCCATGCTGCGAGCAACAAACGTACCGACAGTGAATCAGCAGGAGTGTAACCAGGGCATATCAGTCTTATGGAGGCGTTACGGAACAGAT                              ]




>consensus_6013#0
CCGCCCACGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCG
CACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCAT
TCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATA
TCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGAT
CGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAG
TAAAACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTGCATT
TACTGCGTATTGTACCCCATCCCGGGCATAGCTCAAGTGCCAACAACTACGATATCGCTT
TGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCACTACCGG
AACAGGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGGATTACAA
TGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTGAATCAGC
AGGAGTGTAACCAGGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTTTGTGCAG
GATATAAAGCAGGGTGGTA

consensusID : consensus_6013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCGCGCTGTTTGTAAATGTCTGCCATTGACCAAATCGCTTACCGAATCAGCTGTTTCACTTTCATCCGAATGTTGAGCTCAGCTCAAAGCGTAGATTATAGTAACTATTATTAGGCTGTCCTATCCTTTTCAAGGCACCGTGCACAACACCCGTGCCAGTAGTGCGAAAGCAATAAAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTGTGGTGGGCTGGTTTGTTAACATTCACCAACGCGAGCGAGTGCAATCGGGTAGGGGACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCGGTGGCCAGCCGCTGCACGCGAACGATTCCAGTGGCGATGCGTACTACTTCAGCCCTTGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAATGANTGCTNANAANGATATACGCTTTGCAAGTATGACGCCGTACACCACCAGCTGNTACGGTTGGGTGAGCTGAAGGAAACGCAG]

[+] EMBL BX619649             [ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCGCGCTGTTTGTAAATGTCTGCCATTGACCAAATCGCTTACCGAATCAGCTGTTTCACTTTCATCCGAATGTTGAGCTCAGCTCAAAGCGTAGATTATAGTAACTATTATTAGGCTGTCCTATCCTTTTCAAGGCACCGTGCACAACACCCGTGCCAGTAGTGCGAAAGCAATAAAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTGTGGTGGGCTGGTTTGTTAACATTCACCAACGCGAGCGAGTGCAATCGGGTAGGGGACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCGGTGGCCAGCCGCTGCACGCGAACGATTCCAGTGGCGATGCGTACTACTTCAGCCCTTGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAATGANTGCTNANAANGATATACGCTTTGCAAGTATGACGCCGTACACCACCAGCTGNTACGGTTGGGTGAGCTGAAGGAAACGCAG]




>consensus_6013#1
ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCGCGCTGTTTGTAAATGT
CTGCCATTGACCAAATCGCTTACCGAATCAGCTGTTTCACTTTCATCCGAATGTTGAGCT
CAGCTCAAAGCGTAGATTATAGTAACTATTATTAGGCTGTCCTATCCTTTTCAAGGCACC
GTGCACAACACCCGTGCCAGTAGTGCGAAAGCAATAAAATACCAAAGAGGAAGATGGGCA
AACGCTTCGCCGTAGTGGCAGTGCTGGTGTGGTGGGCTGGTTTGTTAACATTCACCAACG
CGAGCGAGTGCAATCGGGTAGGGGACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTA
ACCTGCGGCCCATCATCGATCTCGGTGGCCAGCCGCTGCACGCGAACGATTCCAGTGGCG
ATGCGTACTACTTCAGCCCTTGCCAGGACATNAACTACACGGCGGATGATAACAAACCGG
ACATAACAAGCAATGANTGCTNANAANGATATACGCTTTGCAAGTATGACGCCGTACACC
ACCAGCTGNTACGGTTGGGTGAGCTGAAGGAAACGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6013#0      CCGCCCACGCGAAAACAATGTCGAGCAAGTTTACAACTATTCTGCTGACGGTGCTTATCG 60
consensus_6013#1      ----------------ACAGGCAGGCATTGTTGTCGCTGTTTCGATGCGCTTAATCATCG 44
                                      *  * *  ***   **    ** **  * **    *  * ****

consensus_6013#0      CACTATTCGCTTGTGCACTGGCACAGGCTGAAAAGCGTCATAAACTTACCCGCCCAGCAT 120
consensus_6013#1      CGCTGTTTGTAAATGT-CTGCCATTGACCAAATCGC-TTACCGAATCAGCTGTTTCAC-T 101
                      * ** ** *    **  *** **  * *  **  ** * *   * * * * *     * *

consensus_6013#0      TCCATCCCAATGCACCCTACTTGACTGGCAAACGGATCGTCGGTGGATTTGTGATCGATA 180
consensus_6013#1      TTCATCCGAATGT--TGAGCTCAGCT--CAAAGCGTAGATTATAGTAACTATTATTAGGC 157
                      * ***** ****       **   **  ****  *    *    * *  * * **     

consensus_6013#0      TCTCTGACGCTCCTTATCAGGTATCCCTGCAGTACAACGGCAAACATCACTGCGGGGGAT 240
consensus_6013#1      TGTCCTA---TCCTTTTCAAGGCACCGTGCACAACACCCGTGC-CAGTAGTGCGAAAG-- 211
                      * **  *   ***** *** *   ** ****  *** * *    **  * ****   *  

consensus_6013#0      CGATCCTGAATAGCAAGTGGATCCTCACAGCAGCACATTGCATCGATCTCTACTCGGAAG 300
consensus_6013#1      CAATA--AAATACCAAAGAGGAAGATGGGCAAACGCTTCGCCGTAGTGGCAGTGCTGGTG 269
                      * **    **** ***   *           * * * * **     *  *    * *  *

consensus_6013#0      TAA-AACCTACCGTACGGGTTGGCTCATCAGAGCACGCTGCCGGTGGAACCGTGCTG--- 356
consensus_6013#1      TGGTGGGCTGGTTTGTTAAC--ATTCACCAACGCGAGCGA---GTGCAATCGGGTAGGGG 324
                      *      **    *          *** **  **  **     *** ** ** *  *   

consensus_6013#0      -CATTTACTGCGTATTGTACCCCATCCCGGGCAT-AGCTCAAGTGCCAACAACTACGATA 414
consensus_6013#1      ACTGTTCCTGCGAGTTTTACGACGGCAGGGGTATTAACCTGCGGCCCATCATCGATCTCG 384
                       *  ** *****  ** ***  *  *  *** ** * *    *  *** ** * *     

consensus_6013#0      TCGCTTTGCTGGAGCTCGAGAGTGAACTTACGTTCAACGATAAGGTTCAACCCGTTGCAC 474
consensus_6013#1      GTGGCCAGCCGCTGCACGCGAACGATTCCAG---TGGCGATGCG-TACTACTTCAGCCCT 440
                        *    ** *  ** ** **  **    *       ****  * * * **      *  

consensus_6013#0      TACCGGAACA-GGATGATCCGATCGACGAAGGAACGATGGGAATCGTCTCTGGTTGGGGG 533
consensus_6013#1      TGCCAGGACATNAACTACACGGCGGATGATAACAAACCGGACATAACAAGCAAT-GANTG 499
                      * ** * ***   *  *  **   ** **    *    **  **         * *   *

consensus_6013#0      ATTACAATGAGTGCAGCTGATTCGAATGCCATCCTGCGAGCAACAAACGTACCGACAGTG 593
consensus_6013#1      CTNANAANGA-TATACGCTTTGCAAGTATGACGCCGTACACCACCAGC-TGNTACGGTTG 557
                       * * ** ** *  *     * * * *   *  * *    * ** * * *        **

consensus_6013#0      AATCAGCAGGAGTGTAACCAGGCATATCAGTCTTATGGAGGCGTTACGGAACAGATGTTT 653
consensus_6013#1      GGTGAGCTGAAGGAAACGCAG--------------------------------------- 578
                        * *** * **   *  ***                                       

consensus_6013#0      TGTGCAGGATATAAAGCAGGGTGGTA 679
consensus_6013#1      --------------------------