These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence [CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATATATACGAGTCGCTNTCACATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAAATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTTTGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCTTGGGCCANACAAACGTTTAACGCACCGGACGGTACCGCCCTACCTGAAATTGGCGCCTCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAATTGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGGACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCTAACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAACATATAGTTACCCCAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACATCACAAAGTCACCACGCTTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACTTGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCACAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACACTACCAACCATCTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCACATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCAC] [+] EMBL AL693690 [CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATATATACGAGTCGCTNTCACATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAAATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTTTGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCTTGGGCCANACAAACGTTTAACGCACCGGACGGTACCGCCCTACCTGAAATTGGCGCCTCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAATTGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGGACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCTAACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAACATATAGTTACCCCAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACATCACAAAGTCACCACGCTTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACTTGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCACAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACACTACCAACCATCTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCACATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCAC] consensusID : consensus_6017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence [TTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTTTGCAGCCCTCTCTTATTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGAATGGACACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAATCCGATTGATAATAATTATTCCAACACGATTACTGCTACATTTCACCTTACACAGGGACAGGACAGACGT-AAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTTAACCTCGGCCTCTCTCGTTTCTCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTAGAAGAAAATTAACTACACATCACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAGCGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCTGTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTTGCATTTGCAAAACTGTACATTTCGTTTGCTGCTTGCATGCTACTACGATGCGCCTCGCGCACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTTTGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGCGTGTCTCTAGCTTGCTTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCCTTGAATCATTTGATTACTAAACAAGTTTA] [-] EMBL AL932363 [TTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTTTGCAGCCCTCTCTTATTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGAATGGACACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAATCCGATTGATAATAATTATTCCAACACGATTACTGCTACATTTCACCTTACACAGGGACAGGACAGACGT AAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTTAACCTCGG ] [-] EMBL BX605009 [ ACTGCTACATTTCACCTTACACAGGGACAGGACAGACGTAAAACCTATCGCACGATGTACTTTCTCTCGCTCTCTCTCTCTCTCTTTCCCTCTCTCGTTTCTCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTAGAAGAAAATTAACTACACATCACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAGCGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCTGTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTTGCATTTGCAAAACTGTACATTTCGTTTGCTGCTTGCATGCTACTACGATGCGCCTCGCGCACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTTTGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGCGTGTCTCTAGCTTGCTTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCCTTGAATCATTTGATTACTAAACAAGTTTA] consensusID : consensus_6017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAAATCTACACTGTTTTTCTTGGGGGAGGAGAGTGGGGGGGTGGGGGCTGTTCTGGAGGGAAGGGTTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGGGCGGCGCGCTGTGGCTATTACTATTACTGAGAACCCAACAGAACTCTTCCTACCTGCTATCTTTTTG--TTTTGTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGG----GGGGGG-GGTCTGTATTGGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGGTGACTTAGAGAGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTAGTAGTGTATGTAGAGGCTCGAACTAACTTCGCTGCCAACAAACGTTTACCACCGTCGTCGCCTACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCTCTCTTGTTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGCGG] [-] EMBL BM608531 [AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAAATCTACACTGTTTTTCTTGGGGGAGGAGAGTGGGGGGGTGGGGGCTGTTCTGGAGGGAAGGGTTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGGGCGGCGCGCTGTGGCTATTACTATTACTGAGAACCCAACAGAACTCTTCCTACCTGCTATCTTTTTG TTTTGTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGG GGGGGG GGTCTGTATTGGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGG ] [-] EMBL BM589851 [ GGGCGGCGCGCTGTGGCTATTACTATTACTGAAAACCCAACAGAACACTTCCTACCTGCTATCTTTTTGTTTTTTTTTTTAATCCTTCGCTGCGGCTGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGCGGTCTGTATTAGGACGTACAATAATATATTTAAATGTATATATGCTCGCATTTATATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCAAATGACTTAGAGAGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTAGTAGTGTATGTAGAGGCTCGAACTAACTTCGCTGCCAACAAACGTTTACCACCGTCGTCGCCTACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCTCTCTTGTTTTGTCATTAATGCTTATAAATGGTGGTATGTACAGAAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6017#1 --------------------------------------TTTTTTAATCCTTCGCTGCGGC 22 consensus_6017#2 ------------------------------------------------------------ consensus_6017#0 CAGATNGCCCCCAGGCTTAAATGCTGTATTNTTTTNCCTTTTNTAATCCTTCGCTGCGGC 60 consensus_6017#1 TGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGG- 81 consensus_6017#2 ------------------------------------------------------------ consensus_6017#0 TGCCGCACTAATAAGTATACACACACACTCTAAGAGGGACGAGAGTTGGGGGAGGGGGGG 120 consensus_6017#1 CGGTCTGTATTAGGACGTACAATAATATATTTA-AATGTA-TATAT-GCTCGCATTTATA 138 consensus_6017#2 ------------------------------------------------------------ consensus_6017#0 CGGTCTGTATTAGGACGTACAATAATATATTTACAATGTACTATATTGCTCGCACTTATA 180 consensus_6017#1 TA---GAGTCGTTCACATCATCGAGAGTCTGCCATGGCCTCCTTTTTCTTTAATGTGTGT 195 consensus_6017#2 ------------------------------------------------------------ consensus_6017#0 TATACGAGTCGCTNTCA-CATACATCGAGGAGTCTGGCATGGGCGCACTTNACAAACCAA 239 consensus_6017#1 GTGTGTTTTTATGCGAAGTAGAAGAAGGATGGTTTATGTTGATGGGTATATGCCGCCTTT 255 consensus_6017#2 ---------AATAGGTAGTAGTAGTAATTGTAAACCTACCGAAGAAGAAACGCGCTCTAA 51 consensus_6017#0 ATGACTTAGAGGANGACGAGAGAGACGAANCGANAGTGAAGNGTGTTCAAAGAAGNGCTT 299 * * ** * * * * consensus_6017#1 TGCAGCCCTCTCTTATTTTGT-CATTAATGCTTATAAATGGT--GGTATGTACAGAAGAA 312 consensus_6017#2 ATCTACACTGTTTTTCTTGGG-GGAGGAGAGTGGGGGGGTGG--GGGCTGTTCTGGAGGG 108 consensus_6017#0 TGTNGTACCTTAATGTTAGGTANGTTATTGTACAGTANGCGTCCGAAACAANCTTCGGCT 359 * * * * * * * * * consensus_6017#1 TGGAC-ACGAAAGCGTCAAAACCTTACTATGCGTTTCCGATTTCCTATTACATTTTCAAT 371 consensus_6017#2 AAGGG-TTGAATACAGTCGAAAGAAAGCGCGCGCTGCTGGCACACGCTTACATCATCAGG 167 consensus_6017#0 TGGGCCANACAAACGTTTAA--CGCACCGGACGGTACCGCCCTACC-TGAAATTGGCGCC 416 * * * * * ** * * * * * * ** * consensus_6017#1 CCGATTGATAATAATTAT-TCCAACACGATTACTGCTACATTTCACC-TTACACAGGGAC 429 consensus_6017#2 GCGGCGCGCTGTGGCTAT-T-----ACTATTACTG--------------------AGAAC 201 consensus_6017#0 TCTNCAATTTGGGCCTACCTTTGNCCCTTTCACTGGTGTNGTAGGTNGTTGTAATATAAT 476 * ** * * * **** * consensus_6017#1 AGGACAGACGTAAACCTATCGCACGATGTA-CTTTCTCTCGCTCTCTCTCTTAACCTCGG 488 consensus_6017#2 CCAACAGAACTCTTCCTACC-TGCTATCT--TTTTGTTTTGTTTTAATCCTTCGCTGCGG 258 consensus_6017#0 TGGGCCGAACCAAGGGTCACGCACCAGACAAGTCGANATNGGGNTCCANATGGATATAGG 536 * ** * * * * * * * * * ** consensus_6017#1 CCTCT-CTCGTTTC-TCGTTTCATAATCACAAACAACATTACGGTAGATATTTCGTACTA 546 consensus_6017#2 CTGC--CGCACTAA-TAAGTATACA--CACACACTCTAAGAGGGACGAGAGTTGGGGGGG 313 consensus_6017#0 ACTTGGCATACTAAATTGGCCCCCGCCCTTATTTCTGGGCCAAGGCCCCNTCCAATCCCT 596 * * * * * * consensus_6017#1 GAAGAAAATTAACTACACATC---ACTACGAGACTGTGAATGGCTGTGAAGAAGAAGGAG 603 consensus_6017#2 GGGTCTGTATTGGGACGTA-C---AATAATATATT-TAAATGTATATATGCTCGCATTTA 368 consensus_6017#0 AACTACNACTACGGGTCCAATCTAAAAANTGCCTTGTAATACAACATTGGGTTGGCGGAA 656 * * * * * * * * * consensus_6017#1 CGGAGCGGTGTTGGCAAAACTGGGAAAAGGGGGAGATGAAAAATAACAGTGCTGCCTGCT 663 consensus_6017#2 TATAGAGTCGTTCACATCATCGAGAGTCTGCCATGGCGCATTACAACCCGGTGACTTAGA 428 consensus_6017#0 CATATAGTTACCC-CAGCACACAGTAAACCTCTNGGTGAGTCACTCCNAACCTGGATACA 715 * * ** * * * * * * * consensus_6017#1 GTAGTATGTGAGTCGCCCAGTGCCTACTACAACACTACGCTCGCTCCTGCGTGCATTGTT 723 consensus_6017#2 G-AGAGAGAGAGAAAGAAAGTGAGAGTGTTAAGAAGGGTTGTAGTACTATGTA----GTA 483 consensus_6017#0 TCACAA----AGTCACCACGC-TTTCCAAAAAAACCACCCCCCCTTTTACACCTNAAACT 770 * ** * ** * * * consensus_6017#1 GCATTTGCAAAACTGTACATTTCGTTTGCTG---CTTGCATGCTACTACGATGCGCCTCG 780 consensus_6017#2 GTGTATGTAGAGGCTCGAACTAACTTCGCTG---CCAACAAACGTTTACCACCGTCGTCG 540 consensus_6017#0 -TGTGCGCCGCATTTTATATCCCCCNGAANAAACTTCATANCCCCTTAACATTATCACCA 829 * * * * * ** * * * consensus_6017#1 CG----CACACTACACACTCTACCATCGAGCTCGAGGGGGCCCAAATGTTTCCCCCCCTT 836 consensus_6017#2 CC----TACTCAATGTGCCTCCTCATTGCCTCCTTTTTCTTTAATGTGTGTGTGTGTTTT 596 consensus_6017#0 CAAATATATATCACCAAACATANCCCCGAACATTAAGGACCCNACAC---TACCAACCAT 886 * * * * * * * * consensus_6017#1 TGTTGGCAGTAATCGATTGAATAGGGTTGGGGGGAGGAAGGTGC-GTGTCTC-TAGCTTG 894 consensus_6017#2 TATGCGAAGTAGAAGAAGGAT--GGTTTATGTTGATGGGTATGCCGCGTTTTGCAGCCCT 654 consensus_6017#0 CTTAACATATATCCCCCCCANCAACAACACGCACACTAATACCACCAATGCGANNACCCA 946 * ** * * * * * consensus_6017#1 C-TTCATTTCAATCAACGGAAAAAGTGTGGCGCTTTTATCGATTATAGGCGCGCGCGTCC 953 consensus_6017#2 C-TCTTGTTTTGTCATT----AATGCTTATAAATGGTGGTATGTACAGAAGCGG------ 703 consensus_6017#0 CATTTATTCCCCACACCGATTATACCATACCAACAGTGATCCANACAAGTGAANACACCA 1006 * * * ** * * * * * * consensus_6017#1 TTGAATCATTTGATTACTAAACAAGTTTA 982 consensus_6017#2 ----------------------------- consensus_6017#0 C---------------------------- 1007 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||