|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 993 fasta sequence
[CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGCTGCTATTATTTTTG-TTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCCGATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACACACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAAAAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGCAAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC]
[+] EMBL CNS08H33 [CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGCTGCTATTATTTTTG TTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACG ]
[+] EMBL CNS08Y1G [ GTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG GTTTGAGGGGTTCTGCTGCTATTATTTTTGCTTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAATTTAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCC TTCCGACGGCATCACCTCCGTCA CCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCCGATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACACACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAAAAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGCAAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC]
consensusID : consensus_6023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCGTTCTCCATC]
[+] EMBL BM589381 [CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCGTTCTCCATC]
consensusID : consensus_6023#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGCGGACGCGTGGGCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTA]
[+] EMBL BM657208 [CCGCGGACGCGTGGGCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTA]
consensusID : consensus_6023#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGGGGAGTGACTTTCACTCGAATCTCGC]
[+] EMBL CNS08FO7 [CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGGGGAGTGACTTTCACTCGAATCTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6023#0 ------------------CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG 42
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG 60
consensus_6023#2 ------------------------------------CCGCGGACGCGTGGGCGCGTACAG 24
consensus_6023#0 CGTTTGAGGGGTTCTGCTGCTATTATTTTTGTTGTTTGGTGTATGTGTGTATATTGTTAG 102
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 CGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAG 120
consensus_6023#2 CGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAG 84
consensus_6023#0 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 162
consensus_6023#3 --------------------CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCAT 40
consensus_6023#1 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 180
consensus_6023#2 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 144
* * * *****************************
consensus_6023#0 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAG 222
consensus_6023#3 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAG 100
consensus_6023#1 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAG 240
consensus_6023#2 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAG 204
*********************************** ************************
consensus_6023#0 CTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 282
consensus_6023#3 CTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 160
consensus_6023#1 CTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 300
consensus_6023#2 CTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 264
************* ** *******************************************
consensus_6023#0 TCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCG 342
consensus_6023#3 TCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCG 220
consensus_6023#1 TCTAATACCCGTGACGCGGAGTGGCGGAATTTAC-------------------------G 335
consensus_6023#2 TCTAATACCCGTGACGCGGAGTGGCGGAATTTAC-------------------------G 299
********************************** *
consensus_6023#0 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 402
consensus_6023#3 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 280
consensus_6023#1 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 395
consensus_6023#2 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 359
************************************************************
consensus_6023#0 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 462
consensus_6023#3 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 340
consensus_6023#1 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 455
consensus_6023#2 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 419
************************************************************
consensus_6023#0 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGC 522
consensus_6023#3 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGC 400
consensus_6023#1 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGC 515
consensus_6023#2 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGC 479
**************************************** *******************
consensus_6023#0 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 582
consensus_6023#3 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 460
consensus_6023#1 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 575
consensus_6023#2 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 539
************************************************************
consensus_6023#0 CCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTT-CGTGTCGAGGAGTGACTTTG 641
consensus_6023#3 C--TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTT-CGTGTCGGGGAGTGACTTTC 516
consensus_6023#1 CC-TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTTTCGTGTCGAGGAGTGACTTTG 633
consensus_6023#2 CC-TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTT-CGTGTCGAGGAGTGACTTTG 596
* ************************* ********** ******* ***********
consensus_6023#0 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGT 701
consensus_6023#3 ACTCGAATCTCGC----------------------------------------------- 529
consensus_6023#1 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCG 693
consensus_6023#2 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTG-TTTTCGCCG 655
*** *********
consensus_6023#0 TCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCC 761
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 TTCTCCATC--------------------------------------------------- 702
consensus_6023#2 TTCTCCATCAAACTTTTGCTA--------------------------------------- 676
consensus_6023#0 GATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACA 821
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 ------------------------------------------------------------
consensus_6023#2 ------------------------------------------------------------
consensus_6023#0 CACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAA 881
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 ------------------------------------------------------------
consensus_6023#2 ------------------------------------------------------------
consensus_6023#0 AAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGC 941
consensus_6023#3 ------------------------------------------------------------
consensus_6023#1 ------------------------------------------------------------
consensus_6023#2 ------------------------------------------------------------
consensus_6023#0 AAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC 993
consensus_6023#3 ----------------------------------------------------
consensus_6023#1 ----------------------------------------------------
consensus_6023#2 ----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||