These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1156 fasta sequence [AGCACAACAGCAAGCCAACCAGCTCTGTAAAGTAATGTCGAAAAACTGATCAACCGAACGACCATCTACGAACATCTGCTGGATGAGCCGGAGAGTGCGTGATTGTGCGATCGCTGTTCNCGTGGGATGTACGACGCTGCTGGAGCAAGCCTCAACCTTTCGCTGCTTTGCTGGAGCGTTTCAGCACAGATCGGGGTCAACTTGACGCCTCGGTTTGGCGGGAAACGTCCCGGTCACACTGATTCATCCGGTTGACCCGTCCAGC-GAAAGAAGAAGCGAGCTTCAGCTGTTGTGCCCTTTCACACAGCGCGCAAAATCACACAACTCTGGATCGTTCTACCCTATAACAATGGCGGGAAGGAAAGGAATTGGTGCTTTAGTCTGGTCCCAAGAGAGAGAGAGAGGAAAAAAACCACTGCCCATCACCGGAAAGCGACTGTTCAGCTCAAGTGTTTCACATTAACAGAAAAACACACAACGTTCCTACCTCTGCTACAGGGGCAGACACAGTCAACTTCCGGAGACGGGCA-ACGATTTTTTTTTTTTTTGGTTTCATTTTTGGACAGAGAAAGCCCATCCGTC-CCACTGGCATTAGCCCGCCAAATGCTCATAGACGAATGTGTTGTGCGGGAATGCGGAGCAAACCAAACCTAGCAATTCTCTGCAACTGCACC-ATCCATCCCACATTCAGCATTGTTTTCTTGTTATATAGATTTAAAAAAAAAAAACCCGCG-AACAACAGTAGCAAACTGAAATACCAAAATGCTTAGCTGCGCAACGAACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGAAAGTTGGGCGACCGGTGCGCTGATNAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTGCCGGGGCACTTCTCCCTTTTGGGGAAGCNGAACAAGAAGAAGAAGAAGACGAAGATTGGTGTAAATATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCAACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAGAAAAAAAGAGAAGGAACGCCGCTTTAGCTACAGCAGCTGCGACGAAGCAACGAAGCAGTAAAAGTTATAGAAAAACGCATCCCAAAATCAAAC] [+] EMBL BX628321 [AGCACAACAGCAAGCCAACCAGCTCTGTAAAGTAATGTCGAAAAACTGATCAACCGAACGACCATCTACGAACATCTGCTGGATGAGCCGGAGAGTGCGTGATTGTGCGATCGCTGTTCNCGTGGGATGTACGACGCTGCTGGAGCAAGCCTCAACCTTTCGCTGCTTTGCTGGAGCGTTTCAGCACAGATCGGGGTCAACTTGACGCCTCGGTTTGGCGGGAAACGTCCCGGTCACACTGATTCATCCGGTTGACCCGTCCAGC GAAAGAAGAAGCGAGCTTCAGCTGTTGTGCCCTTTCACACAGCGCGCAAAATCACACAACTCTGGATCGTTCTACCCTATAACAATGGCGGGAAGGAAAGGAATTGGTGCTTTAGTCTGGTCCCAAGAGAGAGAGAGAGGAAAAAAACCACTGCCCATCACCGGAAAGCGACTGTTCAGCTCAAGTGTTTCACATTAACAGAAAAACACACAACGTTCCTACCTCTGCTACAGGGGCAGACACAGTCAACTTCCGGAGACGGGCA ACGATTTTTTTTTTTTTTGGGTTCATTTTTGGACAGAGAAAGNCCATCCGTC CCACTGG ] [+] EMBL BX619395 [ CTGCTGGATGAGCCGGAGAGTGCGTGATTGTGCGATCGCTGTTCGCGTGGGATGTACGACGCTGCTGGAGCAAGCCTCAACCTTTCGCTGCTTTGCTGGAGCGTTTCAGCACAGATCGGGGTCAACTTGACGCCTCGGTTTGGCGGGAAACGTCCCGGTCACACTGATTCATCCGGTTGACCCGTCCAGCTGAAAGAAGAAGCGAGCTTCAGCTGTTGTGCCCTTTCACACAGCGCGCAAAATCACACAACTCTGGATCGTTCTACCCTATAACAATGGCGGGAAGGAAAGGAATTGGTGCTTTAGTCTGGTCCCAAGAGAGAGAGAGAGGAAAAAAACCACTGCCCATCACCGGAAAGCGACTGTTCAGCTCAAGTGTTTCACATTAACAGAAAAACACACAACGTTCCTACCTCTGCTACAGGGGCAGACACAGTCAACTTCCGGAGACGGGCACACGATTTTTTTTTTTTTTGGTTTCATTTTTGGACAGAGAAAGCCCATCCGTCNCCACTGGCATTAGCCCGCCAAATGCTCATAGACGAATGTGTTGTGCGGGAATGCGGAGCAAACCAAACCTAGCAATTCTCTGCAACTGCACCAATCCAT ] [+] EMBL BX619801 [ GAGAGGAAAAAAACCACTGCCCATCACCGGAAAGCGACTGTTCAGCTCAAGTGTTTCACATTAACAGAAAAACACACAACGTTCCTACCTCTGCTACAGGGGCAGACACAGTCAACTTCCGGAGACGGGCA ACGA TTTTTTTTTTTTGGTTTCATTTTTGGACAGAGAAAGCCCATCCGTC CCACTGGCATTAGCCCGCCAAATGCTCATAGACGAATGTGTTGTGCGGGAATGCGGAGCAAACCAAACCTAGCAATTCTCTGCAACTGCACC ATCCATCCCACATTCAGCATTGTTTTCTTGTTATATAGATTTAAAAAAAAAAAACCCGCGNAACAACAGTAGCAAACTGAAATACCAAAATGCTTAGCTGCGCAACGAACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGAAAGTTGGGCGACCGGTGCGCTGATNAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTGCCGGGGCACTTCTC ] [+] EMBL BX620991 [ TTTGGACAGAGAAAGCCCATCCGTC CCACTGGCATTAGCCCGCCAAATGCTCATAGACGAATGTGTTGTGCGGGAATGCGGAGCAAACCAAACCTAGCAATTCTCTGCAACTGCACC ATCCATCCCACATTCAGCATTGTTTTCTTGTTATATAGATTTAAAAAAAAAAAACCCGCG AACAACAGTAGCAAACTGAAATACCAAAATGCTTAGCTGCGCAACGAACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGAAAGTTGGGCGACCGGTGCGCTGATTAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTGCCGGGGCACTTCTCCCTTTTGGGGAAGCNGAACAAGAAGAAGAAGAAGACGAAGATTGGTGTAAATATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCAACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAGAAAAAAAGAGAAGGAACGCCGCTTTAGCTACAGCAGCTGCGACGAAGCAACGAAGCAGTAAAAGTTATAGAAAAACGCATCCCAAAATCAAAC] consensusID : consensus_6025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [GCCAGAATCGGCACGAGGGAAATACCAAAATGCTTAGCTGCGCAACGAACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGAAAGTTGGGCGACCGGTGCGCTGATTAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTGCCGGGGCACTTCTCCCTTTTGGGGAAGCAGAACAAGAAGAAGAAGAAGACGAAGATTGGTGTAAAATATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCAACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAAAAAAATAAAAAAAAAAA] [+] EMBL BX467544 [GCCAGAATCGGCACGAGGGAAATACCAAAATGCTTAGCTGCGCAACGAACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGAAAGTTGGGCGACCGGTGCGCTGATTAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTGCCGGGGCACTTCTCCCTTTTGGGGAAGCAGAACAAGAAGAAGAAGAAGACGAAGATTGGTGTAAAATATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCAACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAAAAAAATAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6025#0 AGCACAACAGCAAGCCAACCAGCTCTGTAAAGTAATGTCGAAAAACTGATCAACCGAACG 60 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 ACCATCTACGAACATCTGCTGGATGAGCCGGAGAGTGCGTGATTGTGCGATCGCTGTTCN 120 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 CGTGGGATGTACGACGCTGCTGGAGCAAGCCTCAACCTTTCGCTGCTTTGCTGGAGCGTT 180 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 TCAGCACAGATCGGGGTCAACTTGACGCCTCGGTTTGGCGGGAAACGTCCCGGTCACACT 240 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 GATTCATCCGGTTGACCCGTCCAGCGAAAGAAGAAGCGAGCTTCAGCTGTTGTGCCCTTT 300 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 CACACAGCGCGCAAAATCACACAACTCTGGATCGTTCTACCCTATAACAATGGCGGGAAG 360 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 GAAAGGAATTGGTGCTTTAGTCTGGTCCCAAGAGAGAGAGAGAGGAAAAAAACCACTGCC 420 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 CATCACCGGAAAGCGACTGTTCAGCTCAAGTGTTTCACATTAACAGAAAAACACACAACG 480 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 TTCCTACCTCTGCTACAGGGGCAGACACAGTCAACTTCCGGAGACGGGCAACGATTTTTT 540 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 TTTTTTTTGGTTTCATTTTTGGACAGAGAAAGCCCATCCGTCCCACTGGCATTAGCCCGC 600 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 CAAATGCTCATAGACGAATGTGTTGTGCGGGAATGCGGAGCAAACCAAACCTAGCAATTC 660 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 TCTGCAACTGCACCATCCATCCCACATTCAGCATTGTTTTCTTGTTATATAGATTTAAAA 720 consensus_6025#1 ------------------------------------------------------------ consensus_6025#0 AAAAAAAACCCGCGAACAACAGTAGCAAACTGAAATACCAAAATGCTTAGCTGCGCAACG 780 consensus_6025#1 -----------GCCAGAATCGGCACGAGG--GAAATACCAAAATGCTTAGCTGCGCAACG 47 ** * * * * * * ***************************** consensus_6025#0 AACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGA 840 consensus_6025#1 AACAAACTAAAAAAAATGGAAAGGAAGGCAAGGGAAGTGCCCGAAAGGAAAAGGCTAGGA 107 ************************************************************ consensus_6025#0 AAGTTGGGCGACCGGTGCGCTGATNAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTG 900 consensus_6025#1 AAGTTGGGCGACCGGTGCGCTGATTAGTTCCTGGTTCCGATTCACCACTCCACCCCTTTG 167 ************************ *********************************** consensus_6025#0 CCGGGGCACTTCTCCCTTTTGGGGAAGCNGAACAAGAAGAAGAAGAAGACGAAGATTGGT 960 consensus_6025#1 CCGGGGCACTTCTCCCTTTTGGGGAAGCAGAACAAGAAGAAGAAGAAGACGAAGATTGGT 227 **************************** ******************************* consensus_6025#0 GTAAA-TATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCA 1019 consensus_6025#1 GTAAAATATCGAAGTGCCGAACATTTCAAGATTTTTTGTTTTATTCTAGCCACCGCCCCA 287 ***** ****************************************************** consensus_6025#0 ACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAGAAAAAAAGAGAAGGAA 1079 consensus_6025#1 ACTCCAACGCAAACTCGTTCGAAGTGAAAAAGAAGAAGAAGTAAAAAAATAAAAAAAAAA 347 ******************************************* ***** * * ** ** consensus_6025#0 CGCCGCTTTAGCTACAGCAGCTGCGACGAAGCAACGAAGCAGTAAAAGTTATAGAAAAAC 1139 consensus_6025#1 A----------------------------------------------------------- 348 consensus_6025#0 GCATCCCAAAATCAAAC 1156 consensus_6025#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||