These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT-CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG-AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC-GGTGACGAAGGCCGCCGAGCCGGTCAAAGT-GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGG-AGGTGAGCGGTATCTTGAGC] [+] EMBL BM595352 [CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTAACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC GGTGACGAAGGCCGCCGAACCGGTCAAAGT GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTTTCGGTGATAATGGACGATGCGG AGGTGA ] [+] EMBL BM608278 [ ccGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGTAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAAGGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC GGTGACGAAGGCCGCCGAGCCGGTCAAAGT GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGG AGGTGAGCGGTATCTTGAGC] [+] EMBL BM580330 [ ccgTGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCTCCCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAGAAGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCACGGGTGACGAAGGCCGCCGAGCCGGTCAAAGTGGAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGGAAGGTGAGCGGTATCT ] [+] EMBL BM615130 [ ccgGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCAC ] consensusID : consensus_6028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGGTAAGCGAACCAAATTCACGCCGGGGCGTGCGGACCTTTCGTGCGTATTTTATGGGCGGAAAATATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTGTTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTGTATCGCAGAGATCGTGCGGAGGGTGGTGTGTGTGTGTGTGCGTGCGTGTTGAGTGCGATGGGAAGGGAAGGGACGGCATTGTTTTCCGCGGCAAAAGTTTATGCTGTGTGCA] [+] EMBL BM627239 [CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGGTAAGCGAACCAAATTCACGCCGGGGCGTGCGGACCTTTCGTGCGTATTTTATGGGCGGAAAATATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTGTTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTGTATCGCAGAGATCGTGCGGAGGGTGGTGTGTGTGTGTGTGCGTGCGTGTTGAGTGCGATGGGAAGGGAAGGGACGGCATTGTTTTCCGCGGCAAAAGTTTATGCTGTGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6028#0 CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTA 60 consensus_6028#1 -------------------------CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTA 35 ******************************** consensus_6028#0 GGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTG 120 consensus_6028#1 GGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTG 95 ************************************************************ consensus_6028#0 CCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCG 180 consensus_6028#1 CCGAGGTAAGCGA-----ACCAAATTCACGC---CGGGGCGTGCGGACCTTTCGTG--CG 145 ***** ** * * *** *** ** * ** * * * * * ** consensus_6028#0 TAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCA-GCAAGCAGCAGTACCGCCG 239 consensus_6028#1 TA--TTTTATGGGCGGAAAAT-ATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTG 202 ** * * *** * **** ** ** * ** ** * consensus_6028#0 CTGCCAAGGAAACCGCC--CCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAA 297 consensus_6028#1 TTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTG 262 * * * * **** ** ** * * * * ** * * ** * consensus_6028#0 ATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACC 357 consensus_6028#1 TATCGCAGAGATCGTG--CGGAGGGTGGTGTGTGTGTGTGT-GCGTGCGTGTTGAGTGCG 319 * * ** * * ** * * ** * * ** ** * * consensus_6028#0 ATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCTCCCGCCCGAAAGGCTTCGCC 417 consensus_6028#1 ATGGGA----AGGGAAG-------GGACGGCATTGTTTTCCGCGGC--AAAAGTTTATGC 366 ** * ** ** ** * ** * ** * ** * *** * ** * consensus_6028#0 CGCCCGTAAAGCCTCCCCGGCGCGTAGAGCTTCGCCGGGCAGAAAACCGAAGGCAGCAAC 477 consensus_6028#1 TGTGTGCA---------------------------------------------------- 374 * * * consensus_6028#0 CGGCACCACCGCTACCGCCGCGTCCACCACGGTGACGAAGGCCGCCGAGCCGGTCAAAGT 537 consensus_6028#1 ------------------------------------------------------------ consensus_6028#0 GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACAC 597 consensus_6028#1 ------------------------------------------------------------ consensus_6028#0 GGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGA 657 consensus_6028#1 ------------------------------------------------------------ consensus_6028#0 TGCGGAGGTGAGCGGTATCTTGAGC 682 consensus_6028#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||