These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1016 fasta sequence [CCGGTACGCTTAGCGCGCTAGCTAGCGAGAACAAAACGCGTGTGCCGGGTAGCTCGTTGTAATACGCGAGCATCGTGAACCACTTCTACCACAACCACCACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATCGCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT-GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG-CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTGGCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAATCGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAACTTTAATCCCTCGATGTACGAGCGACAA] [+] EMBL BM652699 [CCGGTACGCTTAGCGCGCTAGCTAGCGAGAACAAAACGCGTGTGCCGGGTAGCTCGTTGTAATACGCGAGCATCGTGAACCACTTCTACCACAACCACCACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATCGCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGCAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGATGGGGTGTTGCGGTTTGTACCGTGTATTTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAGCCTGCGGTT ] [+] EMBL BM633420 [ ccGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATT ] [+] EMBL BM640072 [ cCGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTGGCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAATCGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAACTTTAATCCCTCGATGTACGAGCGACAA] consensusID : consensus_6030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGGGGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCATTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGTGGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATTCGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTCGATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAA] [+] EMBL BM655705 [CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGGGGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCATTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGTGGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATTCGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTCGATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAA] consensusID : consensus_6030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [CCGGCGCAGAAGGAAGCAGGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGAATGTGCAATTGAAGGTGTCGTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTTTTTCGTAAGAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCTGTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCACGGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAAGACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAAGCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGATACTGGGCACAC] [+] EMBL BM649941 [CCGGCGCAGAAGGAAGCAGGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGAATGTGCAATTGAAGGTGTCGTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTTTTTCGTAAGAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCTGTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCACGGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAAGACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAAGCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGATACTGGGCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6030#0 ------------------------------------------------------------ consensus_6030#1 CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGG 60 consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 ------------------------------------------------------------ consensus_6030#1 GGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCA 120 consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 ------------------------CCGGTACGCT-TAGCGCGCTAGC-TAGCGAGAACAA 34 consensus_6030#1 TTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGT 180 consensus_6030#2 ------------------------------------------CCGGCGCAGAAGGAAGCA 18 * ** consensus_6030#0 AACGCGTGTGCCGGGTAGCTCGTTGTAA---TACGCGAGCATCGTGAACCACTTCTACCA 91 consensus_6030#1 GGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATT 240 consensus_6030#2 GGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGA---ATGTGCAATT 75 * * * * * ** consensus_6030#0 CAAC-CACC--ACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATC 148 consensus_6030#1 CGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTC 300 consensus_6030#2 GAAGGTGTC--GTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTT 133 * * * * * * * * * ** * consensus_6030#0 GCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCT 208 consensus_6030#1 GATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCT 360 consensus_6030#2 TTTCGTAA-----GAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCT 188 * ***** ** * *** * ** ** ** *** **** ***** consensus_6030#0 GTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGC 268 consensus_6030#1 GTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGC 420 consensus_6030#2 GTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGC 248 *** ****** ******* ** ***** ******* ** *** **************** consensus_6030#0 CTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGA 328 consensus_6030#1 CTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGA 480 consensus_6030#2 CTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCAC 308 *************************** ** * *** * *** * *** * consensus_6030#0 AAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAA 388 consensus_6030#1 AAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAA 540 consensus_6030#2 GGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAA 368 ** ** * **** * *** * * * * * * ** * ** ** consensus_6030#0 GCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAA 448 consensus_6030#1 GCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAA 600 consensus_6030#2 GACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAA 428 * * * * **** ** ** ** ***** ******** ***** ***** * ** consensus_6030#0 GTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGAT 508 consensus_6030#1 GTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGAT 660 consensus_6030#2 GCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGAT 488 * * ** ** ***** ** *********** ***************** ** ******** consensus_6030#0 ACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCC 568 consensus_6030#1 ACTGGGAACTCCGGCGGAGATTTACAA--------------------------------- 687 consensus_6030#2 ACTGGGCACAC------------------------------------------------- 499 ****** ** * consensus_6030#0 CATTCTGCTGATGGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAA 628 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 GCTGAACTCTTCGTACGAATATCTGGAGCTGCGGTTCAGTTCGTCCGTTCGTTCGATAGC 688 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 GTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGC 748 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 GTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGT 808 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 AGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTG 868 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 GCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAAT 928 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 CGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAA 988 consensus_6030#1 ------------------------------------------------------------ consensus_6030#2 ------------------------------------------------------------ consensus_6030#0 CTTTAATCCCTCGATGTACGAGCGACAA 1016 consensus_6030#1 ---------------------------- consensus_6030#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||