cluster # 6032

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Anopheles gambiae
cluster # 6032 cluster # 6032 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6032#0 length = 901 sequences # 4

consensus_6032#1 length = 700 sequences # 1

consensusID : consensus_6032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 901
fasta sequence

                              [AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCTGAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC-------TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT--AGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTTGAAGTTGAAGTGATTTC-AAACAAACAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACGCGGGCGTCCGCGG]

[+] EMBL AL696231             [AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCTGAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC       TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT  AGAGAGCC  TTTTTTGGTTGTGAAGTAATATTTATCCCAAAA CTTACTCGGGTCCATTTGGGATAAAATGGGC AAACGGCACGGACACGGAGTGTGTGTGAAAGTTGAAGTGATTTCAAAACAAACAAAAAAAAAACCGGCACAGACTTGgca                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BM621185             [                                                                             TCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCATCGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCACTCTCCTTTCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAGTGGGCAAAACGGCACGAACACGGAGTGTGTGTTGCAGTTGAAGTGATTTC AAACAAACAAACAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTcgg                                                                                                                                                                        ]
[-] EMBL BM599775             [                                                                                                                                                                                                                                       GTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC       TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT  AGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTG TGAAGTTGAAGTGATTTC AAACAAAC AAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACGCGG          ]
[-] EMBL BM652480             [                                                                                                                                                                                                                                                                                                                                                         t       TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAGTGGGCAAAACGGCACGAACACGGAGTGTGTGTTGCAGTTGAAGTGATTTC AAACAAACAAACAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTATTTCTTTGCGCTTTTGCACTTTTGCTTGCTACTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACCCACGCGTCCGCGG]




>consensus_6032#0
AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCT
GAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGT
TTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGC
TGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATC
CTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTC
TGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCACTCTCCTTTCTCGCT
TGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAG
TAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACG
GACACGGAGTGTGTGTTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAACGGCCACA
GACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGT
CGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGT
GTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAA
CGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTC
TTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTC
AGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACGCGGGCGTCCGCG
G

consensusID : consensus_6032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CGCTTGATGACGCGAATTCCCCCTGTCGATGAAGGGTTCACCTGATATAGTTTATTGTCCCCTGGGGCAGGTGGTGTGGAACTTTTCGCCCCAAAAGTCCTAACTAGACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTTGCACTACTTTGCTGCTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGTC]

[-] EMBL BM632332             [CGCTTGATGACGCGAATTCCCCCTGTCGATGAAGGGTTCACCTGATATAGTTTATTGTCCCCTGGGGCAGGTGGTGTGGAACTTTTCGCCCCAAAAGTCCTAACTAGACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTTGCACTACTTTGCTGCTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGTC]




>consensus_6032#1
CGCTTGATGACGCGAATTCCCCCTGTCGATGAAGGGTTCACCTGATATAGTTTATTGTCC
CCTGGGGCAGGTGGTGTGGAACTTTTCGCCCCAAAAGTCCTAACTAGACCCTTAGCACCA
CGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTTGCACTACTTTGCTGCTTACCG
TTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACC
TTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTGAA
GTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCC
TTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAAC
GTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGA
TAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAAT
AGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTT
GCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACG
CTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6032#0      AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCT 60
consensus_6032#1      ------------------------------------------------------------
                                                                                  

consensus_6032#0      GAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGT 120
consensus_6032#1      ------------------------------------------------------------
                                                                                  

consensus_6032#0      TTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGC 180
consensus_6032#1      ------------------------------------------------------------
                                                                                  

consensus_6032#0      TGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATC 240
consensus_6032#1      -------------CGCTTGATGAC--GCGAATTCCCCCTGTCGATGAAGG-GTTCACCTG 44
                                     *  ***  *  **   **  **    *   ***   ** **  * 

consensus_6032#0      CTCCCTGCTACTA-CTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGT 299
consensus_6032#1      ATATAGTTTATTGTCCCCTGGGGCAGGTGGTG-TGGAACTTTTCGCCCCAAAAGTCCTAA 103
                       *      ** *  *   *    * * *  *  *  *    * ** * *     * **  

consensus_6032#0      CTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCACTCTCCTTTCTCGC 359
consensus_6032#1      CTAG-ACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTT-GC 161
                      ** *    *      *   ***   *** *    *****      **  *  * * * **

consensus_6032#0      TTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAA 419
consensus_6032#1      ACTACTTTGCTG-CTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAA 220
                         *    **    * ********************************************

consensus_6032#0      GTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCAC 479
consensus_6032#1      GTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCAC 280
                      ************************************************************

consensus_6032#0      GGACACGGAGTGTGTGTTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAA-CGGCCA 538
consensus_6032#1      GGACACGGAGTGTGTGT-GAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCA 339
                      ***************** *********************************** ******

consensus_6032#0      CAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTC 598
consensus_6032#1      CAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTC 399
                      ************************************************************

consensus_6032#0      GTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGT 658
consensus_6032#1      GTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGT 459
                      ******************************* ****************************

consensus_6032#0      GTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACT 718
consensus_6032#1      GTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACT 519
                      *********************** *** **** * *************************

consensus_6032#0      AACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTT 778
consensus_6032#1      AACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTT 579
                      ************************************************************

consensus_6032#0      TCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATC 838
consensus_6032#1      TCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATC 639
                      ************************************************************

consensus_6032#0      TCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCT---ACGCGGGCGT 895
consensus_6032#1      TCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGT 699
                      ***********************************************   ***** * **

consensus_6032#0      CCGCGG 901
consensus_6032#1      C----- 700
                      *