These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1402 fasta sequence [CCGCGCCGTGCGTGTGCAATTGGTATTTGGCAATTGCATTGTGATTGCATTAACTTATGGTTTCGGCTCGCGTTAGCCGCGGATCGGGTGAAGGAAGGCCTTTCGGGGAACTGGATCGAAATTGCGTACGGTACGCGATCCGGCTCGGTGCGTGTCATTGTTCAGCATCCCGAAACGGTCGGGCACGGGCCTCAGCTATTTCAAACATTCACCGTACACTAAAGCCCGGTGACGAAGGTGACTCTGTCGGAGAAGTTTTTAATTTCGGTATGCAGCGAGTACAATCACGTGCGTACCTGGCAGGTGCCCCGGTTTCGAGGCATGATCTCCACTCAACCCGGCTCGACACCAGAAGCATCGTTTAAGATCGTTTCACTGGAAGCCGTTGATTCGACGTTTAGCTATTCGGCCGGGAACGATTTCGGCCCGTTCGGCGAACAGGACGACGAACAGATATTCGTGCAAAAGGTCGTCCCCGACACGGACCAACTGTACGTACGGCTGGCCTCGAATGGTGATCGCGTTTGTTTGATCAGATCCGTGGACGGTACTACAATAACATCGTTCTGCGTGCATGAATGCGAGGGATCGCGGATGGGTTCGAGACCGCGCCGGTTCATCCTATCCGGCCACTGTAACGGTGCAATACAGATGTGGGATCTCACGACTGCGCTGGAAATTTCGAAAAAGAAGGATCAACCCAAGCGCACCATCGGTGGACCGACGGCCGACGAGCTGATCCGAGAGTTGGACCAGTGCGACCTAAGCAATAGCCACTGCTCGACGCCCTGCATGTCACCCTGCCCGTCAGCATTTTCGGGCAGCATGATGGAGGCGAACACTGTCGGACGACTGAAACCGTTCAATGTGGCTTTCTTGAATCAGTCAGCTGCAGCGGCAGCCGCAGCCATGGGACTCGGTGGACCACAGGCTGTGCCGGCGCAGGGTCCGGGAGCGATGGGAGCGGCTGGTGCTGGAGCGGCTGCTGGTGCGGCTGCTGCTCCGCAACAACCGGCATTGGCTGCTCAGCAACCTAATCAACCAAACTGATCTCTATTCCGCCGGCGGAGGGACATTTGAGAGTGGTTCCTGTGTTGTTATCTCGAGGTGGAATTTTAGCCGAGGGATGGAAGGTGGCGAATGGTAAAGCCTCA--CCGTCCTTCCAGCCCAAACGCAGTGTTTAAGCTATGCAAGAAGTCCTTATAGCTAATAGGTAATTTTCTCCCATTCTCAGATCTACAAAACTCTCACGCGATAAACGTTGTGCGTTCAAGTTCATGTTCTATGAGTCAGTGGAAGGATTTTTTTTTCTCAGCACACGCTCTTGCCCAACTGGGGCACTAGCATGCTTTCCGTTGCAAATCTATTGTTTATTGTGCTGTTTAACGCATAATGTCAAATA] [+] EMBL BM654469 [CCGCGCCGTGCGTGTGCAATTGGTATTTGGCAATTGCATTGTGATTGCATTAACTTATGGTTTCGGCTCGCGTTAGCCGCGGATCGGGTGAAGGAAGGCCTTTCGGGGAACTGGATCGAAATTGCGTACGGTACGCGATCCGGCTCGGTGCGTGTCATTGTTCAGCATCCCGAAACGGTCGGGCACGGGCCTCAGCTATTTCAAACATTCACCGTACACTAAAGCCCGGTGACGAAGGTGACTCTGTCGGAGAAGTTTTTAATTTCGGTATGCAGCGAGTACAATCACGTGCGTACCTGGCAGGTGCCCCGGTTTCGAGGCATGATCTCCACTCAACCCGGCTCGACACCAGAAGCATCGTTTAAGATCGTTTCACTGGAAGCCGTTGATTCGACGTTTAGCTATTCGGCCGGGAACGATTTCGGCCCGTTCGGCGAACAGGACGACGAACAGATATTCGTGCAAAAGGTCGTCCCCGACACGGACCAACTGTACGTACGGCTGGCCTCGAATGGTGATCGCGTTTGTTTGATCAGATCCGTGGACGGTACTACAATAACATCGTTCTGCGTGCATGAATGCGAGGGATCGCGGATGGGTTCGAGACCGCGCCGGTTCATCCTATCCGGCCACTGTAACGGT ] [+] EMBL BX620476 [ CGACGTTTAGCTATTCGGCCGGGAACGATTTCGGCCCGTTCGGCGAACAGGACGACGAACAGATATTCGTGCAAAAGGTCGTCCCCGACACGGACCAACTGTACGTACGGCTGGCCTCGAATGGTGATCGCGTTTGTTTGATCAGATCCGTGGACGGTACCACAATAACATCGTTCTGCGTGCATGAATGCGAGGGATCGCGGATGGGTTCGAGACCGCGCCGGTTCATCCTATCCGGCCACTGTAACGGTGCAATACAGATGTGGGATCTCACGACTGCGCTGGAAATTTCGAAAAAGAAGGATCAACCCAAGCGCACCATCGGTGGACCGACGGCCGACGAGCTGATCCGAGAGTTGGACCAGTGCGACCTAAGCAATAGCCACTGCTCGACGCCCTGCATGTCACCCTGCCCGTCAGCATTTTCGGGCAGCATGATGGAGGCGAACACTGTCGGACGACTGAAACCGTTCAATGTGGCTTTCTTGAATCAGTCAGCTGCAGCGGCAGCCGCAGCCATGGGACTCGGTGGACCACAGGCTGTGCCGGCGCAGGGTCCGGGAGCGATGGGAGCGGCTGGT TGGAGCGGCTGCTGGTGCGGCTG ] [+] EMBL BX608286 [ GCTGGAAATTCCGAAAAAGAAGGATCAACCCAAGCGCACCATCGGTGGACCGACGGCCGACGAGCTGATCCGAGAGTTGGACCAGTGCGACCTAAGCAATAGCCACTGCTCGACGCCCTGCATGTCACCCTGCCCGTCAGCATTTTCGGGCAGCATGATGGAGGCGAACACTGTCGGACGACTGAAACCGTTCAATGTGGCTTTCTTGAATCAGTCAGCTGCAGCGGCATCCGCAGCCATGGGACTCGGTGGACCACAGGCTGTGCCGGCGCAGGGTCCGGGAGCGATGGGAGCGGCTGGTGCTGGAGCGGCTGCTGGTGCGGCTGCTGCTCCGCAACAACCGGCATTGGCTGCTCAGCAACCTAATCAACCAAACTGATCTCTATTCCGCCGGCGGAGGGACATTTGAGAGTGGTTCCTGTGTTGTTATCTCGAGGTGGAATTTTAGCCGAGGGATGGAAGGTGGCGAATGGTAAAGCCTCA CCGTCCTTCCAGCCCAAACGCAGTGTTTAAGCTATGCAAGAAGTCCTTATAGCTAATAGGTAATTTTCTCCCATTCTCAGATCTACAAAACTCTCACGCGATAAACGTTGTGCGTTCAAGTTCATGTTCTATGAGTCAGTGGAAGGATTTTTTTTTCTCAGCACACGCTCTTGCCCAACTGGGGCACTAGCATGCTTTCCGTTGCA ] [+] EMBL BX613363 [ CAACCCAAGCGCACCATCGGTGGACCGACGGCCGACGAGCTGATCCGAGAGTTGGACCAGTGCGACCTAAGCAATAGCCACTGCTCGACGCCCTGCATGTCACCCTGCCCGTCAGCATTTTCGGGCAGCATGATGGAGGCGAACACTGTCGGACGACTGAAACCGTTCAATGTGGCTTTCTTGAATCAGTCAGCTGCAGCGGCAGCCGCAGCCATGGGACTCGGTGGACCACAGGCTGTGCCGGCGCAGGGTCCGGGAGCGATGGGAGCGGCTGGTGCTGGAGCGGCTGCTGGTGCGGCTGCTGCTCCGCAACAACCGGCATTGGCTGCTCAGCAACCTAATCAACCAAACTGATCTCTATTCCGCCGGCGGAGGGACATTTGAGAGTGGTTCCTGTGTTGTTATCTCGAGGTGGAATTTTAGCCGAGGGATGGAAGGTGGCGAATGGTAAAGCCTCACCCCGTCCTTCCAGCCCAAACGCAGTGTTTAAGCTATGCAAGAAGTCCTTATAGCTAATAGATAATTTTCTCCCATTCTCAGATCTACAAAACTCTCACGCGATAAACGTTGTGCGTTCAAGTTCATGTTCTATGAGTCAGTGGAAGGA TTTTTTTTCTCAGCACACGCTCTTGCCCAACTGGGGCACTAGCATGCTTTCCGTTGCAAATCTATTGTTTATTGTGCTGTTTAACGCATAATGTCAAATA] consensusID : consensus_6033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGTTATTCCGGCTGGCAGCAGATCTTCGTGTCGCCGTACATCGAAACTACGATCGAGCGGATCGCAATCAACGCGAAGATGAATCTGGCCACTTCGGCGGGCGAACAGTCGCACAGCAAGATGGTAGCAATCTCGTACGGCAGCCAAATTCGGCTGTGGGGAATCTCGGAGGACGGCAGCAAGGCCGAGGTGGGCACGTTTAATTTGCATGTGCGCGTGGAGTATTTGTTCTTCATTGGCAGCCAGCTGGTTGCGTTGTCGTCGTCCGGCAAGATCGGCGTTTGGCATGCGATGACGCAGCACTGGCAGATACAGGATCTCGTTCCGATACTTTCGTTCGATACGGCCGGTTCCTTTTTGCTGCTGGGCTGCAACAACGGTTCGATCTACTACATCGATATGCAAAAATTCCCACTGCGTATGAAGGACAACGATCTACTGGTGACAGAGCTGTACAAGGACCCTTCGAACGATCACATCACCGCCATCTCGGTGTATCTAACTCCGAAAACAACAAGCCTTTCGGGGAATTGGATCGAAATTGCGTACGGTACGCGATCCGGCTCGGTGCGTGTCATTGTTCAACATCCCGAAACGGT] [+] EMBL BM598267 [CCGTTATTCCGGCTGGCAGCAGATCTTCGTGTCGCCGTACATCGAAACTACGATCGAGCGGATCGCAATCAACGCGAAGATGAATCTGGCCACTTCGGCGGGCGAACAGTCGCACAGCAAGATGGTAGCAATCTCGTACGGCAGCCAAATTCGGCTGTGGGGAATCTCGGAGGACGGCAGCAAGGCCGAGGTGGGCACGTTTAATTTGCATGTGCGCGTGGAGTATTTGTTCTTCATTGGCAGCCAGCTGGTTGCGTTGTCGTCGTCCGGCAAGATCGGCGTTTGGCATGCGATGACGCAGCACTGGCAGATACAGGATCTCGTTCCGATACTTTCGTTCGATACGGCCGGTTCCTTTTTGCTGCTGGGCTGCAACAACGGTTCGATCTACTACATCGATATGCAAAAATTCCCACTGCGTATGAAGGACAACGATCTACTGGTGACAGAGCTGTACAAGGACCCTTCGAACGATCACATCACCGCCATCTCGGTGTATCTAACTCCGAAAACAACAAGCCTTTCGGGGAATTGGATCGAAATTGCGTACGGTACGCGATCCGGCTCGGTGCGTGTCATTGTTCAACATCCCGAAACGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6033#0 CCGCGCCGTGCGTGTGCAATTGGTATTTGGCAATTGCATTGTGATTGCATTAACTTATGG 60 consensus_6033#1 ------------------------------CCGTTATTCCG-GCTGGCAGCAGATCTTCG 29 * ** * * * *** * * * * consensus_6033#0 TTTCGGCTCGCGTT-AGCCGCGGATCGGGTGAAGGAAGGCCTTTCGGGGAACTGGATCGA 119 consensus_6033#1 TGTCGCCGTACATCGAAACTACGATCGAGCGGATCGCAATCAA-CGCGAAGATGAATCTG 88 * *** * * * * * ***** * * * * ** * * ** *** consensus_6033#0 AATTGCGTACGGTACGCGATCCGGCTCGGTGCGTGTCATTGTTCAGCATCCCGAAACGGT 179 consensus_6033#1 G-CCAC-TTCGGCGGGCGAACAGTCGCACAGCAAGATGGTAG-CAATCTCGTACGGCAGC 145 * * *** **** * * * * ** * * ** ** * * consensus_6033#0 CGGGCACGGGCCTCAGCTATTTCAAACATTCACCGTACACTAAAGCCCGGT--GACGAAG 237 consensus_6033#1 CAAATTCGGCTGTGGGGAATCTCGGAGGACGGCAGCAAGGCCGAGGTGGGCACGTTTAAT 205 * *** * * ** ** * * * * ** ** * ** consensus_6033#0 GTGACTCTGTCGGAGAAGTTTTTAATTTCGGTATGCAGCGAGTACAATCACGTGCGTACC 297 consensus_6033#1 TTGCATGTGCGCGTGGAGTATTTGTTCTTCATTGGCAGCCAGC-TGGTTGCGT-TGTCGT 263 ** * ** * * *** *** * * * ***** ** * *** ** consensus_6033#0 TGGCAGGTGCCCCGGTTTCGAGGCATGATCTCCACTCAACCCGGCTCGACACCAGAAGCA 357 consensus_6033#1 CGTCCGGCAAGATCGGCGTTTGGCATGCGATG-ACGCAGCACTGGCAGATACAGGA--TC 320 * * ** * ****** * ** ** * * * ** ** ** consensus_6033#0 TCGTTTAAGATCGTTTCACTGGAAGCCGTTGATTCGACGTTTAGCTATTCGGCCGGGA-- 415 consensus_6033#1 TCGTTCC-GATACTTTCGTTCGATACGGCCGGTTC--CTTTTTGCTGCTGGGCTGCAACA 377 ***** *** **** * ** * * * *** * *** *** * *** * * consensus_6033#0 ACGATTTCGGCCCGTTCGGCGAACAGGACGACGAACAGATATTCGTGCAAAAGGTCGTCC 475 consensus_6033#1 ACGGTTCGATCTACTACATCGATATGCAAAAATTCCCACTGCGTATGAAGGACAACGATC 437 *** ** * * * *** * * * * * ** * * ** * consensus_6033#0 CCGACACGGACCAACTGTACGTACGGCTGGCCTCGAATGGTGATCGCGTTTGTTTGATCA 535 consensus_6033#1 TACTGGTGACAGAGCTGTACA-AGGACC--CTTCGAACG---ATCACATCACCGCCATC- 490 * * ****** * * * * ***** * *** * * *** consensus_6033#0 GATCCGTGGACGGTACTACAATAACATCGTTCTGCGTGCATGAATGCGA-GGGATCGCGG 594 consensus_6033#1 --TCGGTGTATCTAACTCCGAAAACAACAAGCCTTTCGGGGAATTGGATCGAAATTGCGT 548 ** *** * *** * * **** * * * * ** * ** *** consensus_6033#0 ATGGGTTCGAGACCGCGCCGGTTCATCCTATCCGGCCACTGTAACGGTGCAATACAGATG 654 consensus_6033#1 ACGGTACGCGATCCGGCTCGGTGCGTGTCATT-GTTCAACATCCCGAAACGGT------- 600 * ** *** **** * * ** * ** * ** * * consensus_6033#0 TGGGATCTCACGACTGCGCTGGAAATTTCGAAAAAGAAGGATCAACCCAAGCGCACCATC 714 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GGTGGACCGACGGCCGACGAGCTGATCCGAGAGTTGGACCAGTGCGACCTAAGCAATAGC 774 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 CACTGCTCGACGCCCTGCATGTCACCCTGCCCGTCAGCATTTTCGGGCAGCATGATGGAG 834 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GCGAACACTGTCGGACGACTGAAACCGTTCAATGTGGCTTTCTTGAATCAGTCAGCTGCA 894 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GCGGCAGCCGCAGCCATGGGACTCGGTGGACCACAGGCTGTGCCGGCGCAGGGTCCGGGA 954 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GCGATGGGAGCGGCTGGTGCTGGAGCGGCTGCTGGTGCGGCTGCTGCTCCGCAACAACCG 1014 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GCATTGGCTGCTCAGCAACCTAATCAACCAAACTGATCTCTATTCCGCCGGCGGAGGGAC 1074 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 ATTTGAGAGTGGTTCCTGTGTTGTTATCTCGAGGTGGAATTTTAGCCGAGGGATGGAAGG 1134 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 TGGCGAATGGTAAAGCCTCACCGTCCTTCCAGCCCAAACGCAGTGTTTAAGCTATGCAAG 1194 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 AAGTCCTTATAGCTAATAGGTAATTTTCTCCCATTCTCAGATCTACAAAACTCTCACGCG 1254 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 ATAAACGTTGTGCGTTCAAGTTCATGTTCTATGAGTCAGTGGAAGGATTTTTTTTTCTCA 1314 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 GCACACGCTCTTGCCCAACTGGGGCACTAGCATGCTTTCCGTTGCAAATCTATTGTTTAT 1374 consensus_6033#1 ------------------------------------------------------------ consensus_6033#0 TGTGCTGTTTAACGCATAATGTCAAATA 1402 consensus_6033#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||