These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG-GTTCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACAAAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCGCGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGTCGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGGAGCGGCAG] [+] EMBL CNS08QOR [GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG GTTCGGCGT CACCTCTTCCAGCGTATCTT CACACTGCTGCCAACGGg ] [+] EMBL BX606973 [ AAAGTGATAATAGAAAACTCTTCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTTACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTT ] [+] EMBL CNS092LB [ gGAGAAGAGAAAACGCTCCCCCTCCTCATGATAAGGACTGCAATCGTCTGTGATCTGGTTGTGTATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAG GTTCGGCGTCCACCTCTTCCAGCGTATCTTCTACACTACTGCCAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCCAATCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACTTCCCTGGCAGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACAAAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCGCGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGTCGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGGAGCGGCAG] [+] EMBL BM606209 [ CATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCATCCCGCGTGCCGCTCAAACTAAAACGCAATGGATACGGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAACGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGAAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGTACAAAG GGGCCGTCACGCCGATCATCCCCGGGCGCAACA ] consensusID : consensus_6037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTGCAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTTCTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT] [+] EMBL BM612545 [CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCCTCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGTATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTGCAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTTCTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGATCGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGCCAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCGGCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCGCGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCCGCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6037#0 ---------------------GGCGAAAAAGAGAAAAGTGATAATAGAAAACTCTCCCCC 39 consensus_6037#1 CCGCACAACAAAGGCTCAGTCGTGGAAAAAGAGAAAAGTGATAATAGAAAACTATCCCCC 60 * ***************************** ****** consensus_6037#0 TCCTCATGATAAGGACTGCAATCGTCTGTCATCTGGTTGTGTATCTGGCTAGTTTTTAGT 99 consensus_6037#1 TCCTCATGATAAGGGCTGCAATCGTCTGTCATCTGGTTGTGCATCTGGCTAGTTTTTAGT 120 ************** ************************** ****************** consensus_6037#0 ATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGT---------- 149 consensus_6037#1 ATTTCCCGCAGCCCGCGTGCCGCGCAAACTAAAACGCAATGGATACGGGTAACAAGTGTG 180 ************************************************** consensus_6037#0 ------------------------------------------------------------ consensus_6037#1 CAGACATGACCTAGTTGAGCGCTAATCTAATCACATCACATCTCGCTCGCTCGCTCGCTT 240 consensus_6037#0 --------------CGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGAT 195 consensus_6037#1 CTCCCGTTGCAGGTCGACGTACTGAGGGTGATGGTATGGAGCACGAGGAGCTCGCTGGAT 300 ********************************************** consensus_6037#0 CGTTCACAGGAGCGAAG-GTTCGGCGTCCACCTCTTCCAGCGTATCTTCCACACTGCTGC 254 consensus_6037#1 CGTTCACAGGAGCGAAGCGATCGGCGTCCACCTCTTCCAGCGTAACTTCCACACTGCTGC 360 ***************** * ************************ *************** consensus_6037#0 CAACGGCGGACATAAAGCTGCCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCG 314 consensus_6037#1 CAACGGCGGACATAAAGCTACCGGCAAACTTTTCCATCGAACGACTGCTACCTCACTCCG 420 ******************* **************************************** consensus_6037#0 GCGCGAACCCAGTGTACCGGCCGACCGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCG 374 consensus_6037#1 GCGCGAACCCAGTGTACCGGCCGACTGAGCTCGTCACCGGTGGGAACACCTCCCTGGCCG 480 ************************* ********************************** consensus_6037#0 CGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTGGCGCCCGGTGGCC 434 consensus_6037#1 CGGTAGTGCCACGCGGCAAAGTGTTCAACCTGGTGCCCCGGCTGGTAGCGCCCGGTGGCC 540 ********************************************** ************* consensus_6037#0 GCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAGTTTGTCCCGTTCGAACCGTACA 494 consensus_6037#1 GCCCGAAGCTAGCGACGATGCACAGCAAAGAGCCAAAATTTGTCCCGTTCGAACCGT--- 597 ************************************* ******************* consensus_6037#0 AAGCGCGCGCCGTCACGCCGATCATCCCCGGGCGCAACAGCATCCCCGGCGGCTGGATCG 554 consensus_6037#1 ------------------------------------------------------------ consensus_6037#0 CGCGCTAAAGCTGGCCAACCCGCAACAATCTCGACCTGAGCGTGCTCGTCTCGCAGATGT 614 consensus_6037#1 ------------------------------------------------------------ consensus_6037#0 CGACCATCGCGGACAAGGAGCTGCGCACCAGTGCCGCCCCAGCGTCGGTCGAGGACGAGG 674 consensus_6037#1 ------------------------------------------------------------ consensus_6037#0 AGCGGCAG 682 consensus_6037#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||