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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1118 fasta sequence
[CCGCGGACGCGTGGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAAAACAACAACAATCCATTACCACCACCATTCAGCCGAAAACGGGCAAGGAAATGCATTTTTGTGTTGTTAAAGACGGAATAATTTAAAATAAGCTAGCTAGCTAGTTGCGTTCCCAGCTCCTCCTGTAAGTGTAAAACCCCTTTTCAGTTAGTGTGTAAGCGATTTTAGCGATTTAAAAGAAAATGAAAAAAAACAATAGAAAATAGAATGCGCAAGTAGAGGGGGGAAAACCACAAAACATCTCTTTACAGTACAACACACAAACACACAGATGAACACAAACAAGCTAACACAGCCACCATCGGCTTTGTTTTTACATGCAAAAATGGAGACTGAACTACACCTAAATCGAAATTGATGGTGGTAGTGGTGCTAGTATGCGTACGTGTACGTGTATTTGTGTGTGTGTGGTTCCGTGTTGTGTGCGCTGAATATCATTTGAAATGCATAAAAATATTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGTTACTACTACGATTACTACTACTTCTACTACTACTACTTATTGTACTAATGTCACCACGCAAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGCAAGGGAGAAACATGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTGCTACTTAAGGACGGTTTATCACGTTTTGCACATTGCCCCCCCCCCCCCTAGGTTCTCATGCTCTTGTTTTGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTTGCTTTAAATACCTTGACAGAGTTGCACAACACAAAAAAGTGATTTTTTTTTTTATTTTTGAAACACAGAAGTCAATGAAAAACAGTTAAAATAGACAAAAGAAAATTAGTAACAGTTTCCAACATGCCTCAAGATCGTATAACAATCACAACACAAACACAGTAACAAATGGGAAAATGGGAAACAAACAGAAGAATA--CCCCCCAAT-GTGTGTAAAGTAGATGAAACC]
[+] EMBL BM613262 [CCGCGGACGCGTGGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAAAACAACAACAATCCATTACCACCACCATTCAGCCGAAAACGGGCAAGGAAATGCATTTTTGTGTTGTTAAAGACGGAATAATTTAAAATAAGCTAGCTAGCTAGTTGCGTTCCCAGCTCCTCCTGTAAGTGTAAAACCCCTTTTCAGTTAGTGTGTAAGCGATTTTAGCGATTTAAAAGAAAATGAAAAAAAACAATAGAAAATAGAATGCGCAAGTAGAGGGGGGAAAACCACAAAACATCTCTTTACAGTACAACACACAAACACACAGATGAACACAAACAAGCTAACACAGCCACCATCGGCTTTGTTTTTACATGCAAAAATGGAGACTGAACTACACCTAAATCGAAATTGATGGTGGTAGTGGTGCTAGTATGCGTACGTGTACGTGTATTTGTGTGTGTGTGGTTCCGTGTTGTGTGCGCTGAATATCATTTGAAATGCATAAAAATATTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGGTACTACTACGATTACTACTACTTCTACTA ]
[+] EMBL BM652875 [ ccGTGCTAGTATGCGTACGTGTACGTGTATTTGTGTGTGTGTGGTTCCGTGTTGTGTGCGCTGAATATCATTTGAAATGCATAAAAATATTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGTTACTACTACGATTACTACTACTTCTACTACTACTACTTATTGTACTAATGTCACCACGCAAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGCAAGGGAGAAACATGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTGCTACTTAAGGACGGTTTATCACGTTTTGCACATTGCCCCCCCCCCCCCTAGGTTCTCATGCTCTTGTTTTGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTTGCTTTAAATACCTTGACAGAGTTGCACAACACAAAAAAGTGATTTTTTTTTTTATTTTTGAAACACAGAAGTCAATGAAAAACAGTTAAAATAGACAAAAGAAAATTAGTAACAGTTTCCAACATGCCTCAAGATCGTATAACAATCACAACACAAACACAGTAACAAATGGGAAAATGGGAAACAAACAGAAGAATA CCCCCCAAT GTGTGTAAAGTAGATGAAACC]
[+] EMBL BM594169 [ ccgGCTGAATATCATTTGAAATGCATAAAAATATTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGTTACTACTACGATTACTACTACTTCTACTACTACTACTTATTGTACTAATGTCACCACGCAAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGCAAGGGAGAAACATGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTGCTACTTAAGGACGGTTTATCACGTTTTGCACATTGCCCCCCCCCCCCCTAGGTTCTCATGCTCTTGTTTTGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTTGCTTTAAATACCTTGACAGAGTTGCACAACACAAAAAAGTGATTTTTTTTTTTATTTTTGAAACACAGAAGTCAATGAAAAACAGTTAAAATAGACAAAAGAAAATTAGTAACAGTTTCCAACATGCCTCAAGATCGTATAACAATCACAACACAAACACAGTAACAAATGGGAAAATGGGAAACAAACAGAAGAATACCCCCCCCAATGGGGTGTAAAGTAGATG ]
consensusID : consensus_6039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[GCCCGAGGATTTGCATAAAATAGTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGTTACTACTACGATTACTACTACTTCTACTACTACTACTACTTATTGTACTAATGTCACCACGCAAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGCGAGGGAGAAACAAGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTGCTACTTAAGGACGGTTTATCACGTTNTTGCACATTTGCCCCCCCCCCTGGTTCTCATGCTCTTGATATANNAGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTNNNGCTTTAAATACTTGTGACAGAGTTGCACAACACAAAAAGTGAAAGTTATNAGATTCTNTATTTTGTAATTTTATNTGAAACACAGAAGTCAAATGAAAAACAGTTAAAAGTAGACACAAAGAAACTTTAGTAACAGTTTCCAAATGCCTCAAGATCGTATAACAATCACCAACACAAACACAGTAACAAATGGGAAAATGGGCACACAAACAGAAGAATACCCCCCAGTGTGTAAAGTAC]
[+] EMBL AL693633 [GCCCGAGGATTTGCATAAAATAGTGGAAAGATGTAGCGAGAGAAAGATAGAGAGAGAAATAGGCAGGTTAACCCGTTCGACCGATGATTATTCCCAATTATTCTTGTTACTACTACGATTACTACTACTTCTACTACTACTACTACTTATTGTACTAATGTCACCACGCAAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGCGAGGGAGAAACAAGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTGCTACTTAAGGACGGTTTATCACGTTNTTGCACATTTGCCCCCCCCCCTGGTTCTCATGCTCTTGATATANNAGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTNNNGCTTTAAATACTTGTGACAGAGTTGCACAACACAAAAAGTGAAAGTTATNAGATTCTNTATTTTGTAATTTTATNTGAAACACAGAAGTCAAATGAAAAACAGTTAAAAGTAGACACAAAGAAACTTTAGTAACAGTTTCCAAATGCCTCAAGATCGTATAACAATCACCAACACAAACACAGTAACAAATGGGAAAATGGGCACACAAACAGAAGAATACCCCCCAGTGTGTAAAGTAC]
consensusID : consensus_6039#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[CCGGGAGAGCATAGAGAACAGGCACATACAGATGAAAGGGGTAAGACAACCTGTACCAACCAACCTCTAGTGCTACGCAGCTACAGGAGAATGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAAAACAACAACAATCCATTACCACCACCATTCAGCCGAAAACGGGCAAGGAAATGCATTTTTGTGTTGTTAAAGACGGAATAATTTAAAATAAGCTAGCTAGCTAGTTGCGTTCCCAGCTCCTCCTGTAAGTGTAAAACCCCTTTTCAGTTAGTGTGTAAGCGATTTTAGCGATTT]
[+] EMBL BM598170 [CCGGGAGAGCATAGAGAACAGGCACATACAGATGAAAGGGGTAAGACAACCTGTACCAACCAACCTCTAGTGCTACGCAGCTACAGGAGAATGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAAAACAACAACAATCCATTACCACCACCATTCAGCCGAAAACGGGCAAGGAAATGCATTTTTGTGTTGTTAAAGACGGAATAATTTAAAATAAGCTAGCTAGCTAGTTGCGTTCCCAGCTCCTCCTGTAAGTGTAAAACCCCTTTTCAGTTAGTGTGTAAGCGATTTTAGCGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6039#0 CCGCGGACGCGTGGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAAAACAA 60
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 CAACAATCCATTACCACCACCATTCAGCCGAAAACGGGCAAGGAAATGCATTTTTGTGTT 120
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 GTTAAAGACGGAATAATTTAAAATAAGCTAGCTAGCTAGTTGCGTTCCCAGCTCCTCCTG 180
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 TAAGTGTAAAACCCCTTTTCAGTTAGTGTGTAAGCGATTTTAGCGATTTAAAAGAAAATG 240
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 AAAAAAAACAATAGAAAATAGAATGCGCAAGTAGAGGGGGGAAAACCACAAAACATCTCT 300
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 TTACAGTACAACACACAAACACACAGATGAACACAAACAAGCTAACACAGCCACCATCGG 360
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 CTTTGTTTTTACATGCAAAAATGGAGACTGAACTACACCTAAATCGAAATTGATGGTGGT 420
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 AGTGGTGCTAGTATGCGTACGTGTACGTGTATTTGTGTGTGTGTGGTTCCGTGTTGTGTG 480
consensus_6039#1 ------------------------------------------------------------
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 CGCTGAATATCATTTGAAATGCATAAAAATATTGGAAAGATGTAGCGAG-AGAAAGATAG 539
consensus_6039#1 --------GCCCGAGGATTTGCATAAAA-TAGTGGAAAGATGTAGCGAG-AGAAAGATAG 50
consensus_6039#2 -------------------------------CCGGGAGAGCATAGAGAACAGGCACATAC 29
** * *** ** ** * ***
consensus_6039#0 AGAGAGAAATAGGCAGGTTAACCCGT-TCGACCGATGATTATTCCCAATTATTCTTGTTA 598
consensus_6039#1 AGAGAGAAATAGGCAGGTTAACCCGT-TCGACCGATGATTATTCCCAATTATTCTTGTTA 109
consensus_6039#2 AGAT-GAAAGGGGTAAGACAACCTGTACCAACCAACCTCTAGTGCTACGCAGCTACAGGA 88
*** **** ** * * **** ** * *** * ** * * * * *
consensus_6039#0 CTACTACGATTACTACTACTTCTACTACTACTACT---TATTGTACTAATGTCACCACGC 655
consensus_6039#1 CTACTACGATTACTACTACTTCTACTACTACTACTACTTATTGTACTAATGTCACCACGC 169
consensus_6039#2 GAATGGGAAGAAATAGACGTAATCGCGAAACAAAACAAAAACATAA-AACAACAACAATC 147
* * * ** * * ** * * ** ** ** ** *
consensus_6039#0 AAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGC 715
consensus_6039#1 AAACACCGCAAGTTGCTAGGTTTTTGAGAGGCAGTGGAGAAGAGCGAGGGCTTTGCTCGC 229
consensus_6039#2 CATTACCACCA-CCATTCAGCCGAAAACGGGCAA-GGAAATGCATTTTTGTGTTGTTAAA 205
* *** * * * * * **** *** * * * *** *
consensus_6039#0 AAGGGAGAAACATGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTG 775
consensus_6039#1 GAGGGAGAAACAAGAGGAGAAACAGTTCGTTATCTTCCGCGTATCATCATCCTTTTCCTG 289
consensus_6039#2 GACGGAATAATTTAAAATAAGCTAGCTAGCTAGTT-----GCGTTCCCAGC-TCCTCCTG 259
* *** ** * * ** * * ** * * * ** * * *****
consensus_6039#0 CTACTTAAGGACGGTTTATCACGTTTT-GCACATTGCCCCCCCCCCCCCTAGGTTCTCAT 834
consensus_6039#1 CTACTTAAGGACGGTTTATCACGTTNTTGCACATTTGCCCCCCCCCCT---GGTTCTCAT 346
consensus_6039#2 TAAGTGTAAAACCCCTTTTCA-GTTAGTGTGTAAGCGATTTTAGCGATTT---------- 308
* * * ** ** *** *** * * *
consensus_6039#0 GCTCTTGTTTT----GTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTT 890
consensus_6039#1 GCTCTTGATATANNAGTGTCTGTGTGTTAAGTTTGATTTTTCTCCAATTTACCTAATGTN 406
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 GC--TTTAAATACCT-TGACAGAGTTGCACAACACAAAAA-----AGTGATTTTTTTTTT 942
consensus_6039#1 NNGCTTTAAATACTTGTGACAGAGTTGCACAACACAAAAAGTGAAAGTTATNAGATTCTN 466
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 TATTTT-----------TGAAACACAGAAGTCAA-TGAAAAACAGTTAAAA-TAGACAAA 989
consensus_6039#1 TATTTTGTAATTTTATNTGAAACACAGAAGTCAAATGAAAAACAGTTAAAAGTAGACACA 526
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 AGAAAA--TTAGTAACAGTTTCCAACATGCCTCAAGATCGTATAACAATCAC-AACACAA 1046
consensus_6039#1 AAGAAACTTTAGTAACAGTTTCCAA-ATGCCTCAAGATCGTATAACAATCACCAACACAA 585
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 ACACAGTAACAAATGGGAAAATGGGAA-ACAAACAGAAGAATACCCCCCAATGTGTGTAA 1105
consensus_6039#1 ACACAGTAACAAATGGGAAAATGGGCACACAAACAGAAGAATACCCCCCA--GTGTGTAA 643
consensus_6039#2 ------------------------------------------------------------
consensus_6039#0 AGTAGATGAAACC 1118
consensus_6039#1 AGTAC-------- 648
consensus_6039#2 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||