These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [CCGCCCACGCGTCCG-GCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGC-GTATGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGGACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGAAACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGGCCTCGAGCAACTACGTCAACAGAAAGATACCA] [+] EMBL BM575588 [CCGCCCACGCGTCCG GCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGC GTA ] [+] EMBL BM581147 [ CCGAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCTGT TGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGGACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGAAACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGGCCTCGAGCAACTACGTCAACAGAAAGATACCA] consensusID : consensus_6042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGTTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGGCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA] [+] EMBL BM633027 [CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGTTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGGCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA] consensusID : consensus_6042#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence [CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAATGAATTGTAATGAATT] [+] EMBL BM617561 [CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAATGAATTGTAATGAATT] [+] EMBL BM585748 [ ccgGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6042#1 CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCC 60 consensus_6042#2 --------------CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCC 46 consensus_6042#0 ----------------------------CCGCCCACGCGTCCGGCGGACGTGTGTTACCC 32 * * ** ***************** consensus_6042#1 TCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 120 consensus_6042#2 TCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 106 consensus_6042#0 TCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 92 *** ***************** ************************************** consensus_6042#1 CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 180 consensus_6042#2 CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 166 consensus_6042#0 CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 152 ************************************************************ consensus_6042#1 AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 240 consensus_6042#2 AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 226 consensus_6042#0 AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 212 ************************************************************ consensus_6042#1 GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAAT 300 consensus_6042#2 GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGC------TATATACACAGAACAAT 280 consensus_6042#0 GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGC------TATATACACAGAACAAT 266 ************************************* ***************** consensus_6042#1 AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACG-TGTGTTTGAAAGTGG 359 consensus_6042#2 AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACG-TGTGCTTGAAAGTGG 339 consensus_6042#0 AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTATGGTGTGTGTGCTTGTCG 326 ****************************************** * **** ** ** * consensus_6042#1 TCGAGAAAAGACACA-ACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTG 418 consensus_6042#2 TCGAGAAAAGACACA-ACTGTAGCTTATTTTTTT-ATTTTGGTTTGTTGTTTTATTGTTG 397 consensus_6042#0 CTGTTGCTGCATACGGAGCGAAGGCGAGAACGCC---GTAAAACCGACGCAGCAATAA-A 382 * * ** * * ** * * * * * * consensus_6042#1 ACCGTGTGGTGACCATCAAAACCAGTGTTG-GTGTGTGTGCTTGGCGCTGTTGCTGCATA 477 consensus_6042#2 ACCGTGTGGTGACCATCAAAACCAGTGTTG-GTGTGTGTGCTTGTCGCTGTTGCTGCATA 456 consensus_6042#0 AGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATC 442 * * * * * * ** * * * * * * *** consensus_6042#1 C---GGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAA 534 consensus_6042#2 C---GGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAA 513 consensus_6042#0 CCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGG 502 * *** * * * ** * ** *** * * * * * * consensus_6042#1 ACCGGGTGCAATAAAACA-TACAC------------ACACATACGACCGGCCACACAT-- 579 consensus_6042#2 ACCGGGTGCAATAAAACA-TACAC------------ACACATACATACACATACACTCA- 559 consensus_6042#0 ACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGA 562 ** ** *** * ** * *** *** * ** * consensus_6042#1 ----CCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA----------------- 618 consensus_6042#2 --CACTGTCATATTTATGCGGAATGAATTGTAATGAATT--------------------- 596 consensus_6042#0 AACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGG 622 * * * * * * * * * consensus_6042#1 -------------------------------- consensus_6042#2 -------------------------------- consensus_6042#0 CCTCGAGCAACTACGTCAACAGAAAGATACCA 654 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||