These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence [CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC] [+] EMBL BM655316 [CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGT ] [+] EMBL BX625757 [ GTGATAGAGTTCTTCCACTAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGAGTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATA ] [+] EMBL BX626177 [ AAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTTGGAAGGCAAGGAAGATATACAGATGAGTTCTATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCCCAACAAGTCAATGACCTGTGAAGAGAGTGAAATAATGCTGGACGATACCGCTCAAGCCACTCCAGATGATAGTCCACTAGACGATACCGCTCAAACAAAAGCTGAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGAGGGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTAAATACGCGCGGGAATTACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCGTATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCGAAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTACGCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGCATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC] consensusID : consensus_6048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 764 fasta sequence [TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGATTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATA] [+] EMBL BX608642 [TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGGCATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCTGCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGGAAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGATCCACAGTGATGTGATAGAGTTCTTCCACGAGCAGGGCATCAATCAGGTTACCATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCTAGGCAGTGGTACGGAGTGCTGCTTGATCCAGTGCCGAACGATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGAAGAGAGTAAAGTTGAGTCGGAAGGCAAGGAAGATATACAGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGGTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTCAATGACCTGTGAAGAGATTGAAATAACACTGGACGATGCCGCTCAAGCCACTCCAAATGATAGTCCACTAGACGATACCGCGCAAACAAACGCTAAGAAGAGCACCGTCTCAGCCACAGTACAAATAAGCCCAGTTAAGACTGAATGCGAGCAGGTGGCGCAGGTAGACGGTGATA] consensusID : consensus_6048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [AATCGCAGAGGTTTAAGGTGTACTTAAAGATCCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTACATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTGGTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAAGAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTCANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAATCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCTCAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTGGCTGCACGGTAGACGGTGATCAAGA] [+] EMBL AL696311 [AATCGCAGAGGTTTAAGGTGTACTTAAAGATCCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTACATTCAGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTGGTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGTCCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAAGAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCAGTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTCANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAATCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCTCAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTGGCTGCACGGTAGACGGTGATCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6048#0 --------CCGCCCACGCGTCCGTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGG 52 consensus_6048#1 TTCGATAGTGTCCTGCATCATTTTGCTCACCCTAAGCTACCCTTACATGAAAGAATCGGG 60 consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 CATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCT 112 consensus_6048#1 CATGATTCTGCTGCAAACCATCCCCGATACGATCGATATAGAAATCTTCAAGAAGACGCT 120 consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 GCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGG 172 consensus_6048#1 GCTTGATGGCTTCAAGGATATTGTCAGTGTGCATGATCTTCATATTTGGCAGCTAAGCGG 180 consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 AAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGAT 232 consensus_6048#1 AAACCAGTACGTCTCAACGGTGCACATCATCTTTGACAACCCAAAGGTGTACTTAAAGAT 240 consensus_6048#2 -----------------------------AATCGCAGAGGTTTAAGGTGTACTTAAAGAT 31 * * * ***************** consensus_6048#0 CCACAGT--GATGTGATAGAGTTCTTCCACGAGCAGGG-CATCAA-TCAGGTTACCATTC 288 consensus_6048#1 CCACAGT--GATGTGATAGAGTTCTTCCACGAGCAGGG-CATCAA-TCAGGTTACCATTC 296 consensus_6048#2 CCACAGCTGAATGTGATAGAGTTCTTCCACGAGCAGGGGCATCAAATCAGGTTAC-ATTC 90 ****** **************************** ****** ********* **** consensus_6048#0 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCC-TAGGCAGTGGTACGGAGTGCT-G 346 consensus_6048#1 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCC-TAGGCAGTGGTACGGAGTGCT-G 354 consensus_6048#2 AGCCGGAGTTTAAGGTGACGGACGAAAAGCGTACCCCTAAGCAGTGGTACGGAGTGCTTG 150 ************************************ ** ****************** * consensus_6048#0 CTTGATCCAGTGCCGAAC-GATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGT 405 consensus_6048#1 CTTGATCCAGTGCCGAAC-GATTGCCCAGTGCGCTAGCCGTACGTGCTGTGATACGCTGT 413 consensus_6048#2 GTTGATCCAGTGCCGAACCGATTGGCCAGTGCGCTANCCGTACGTGCTGTGATACGCTGT 210 ***************** ***** *********** *********************** consensus_6048#0 CCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGG-AA 464 consensus_6048#1 CCCAGGAGGCGGCGGCCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGG-AA 472 consensus_6048#2 CCCAGGAGGCCGGCGGCAAGCAGGCCTTGCTGACGGAAGTTGTCGATTTGCCGCGGGCAA 270 ********** * * ***************************************** ** consensus_6048#0 GAGAGTAAAGTTGAG-TCGGAAGGCA-AGGAAGATATACA-GATGAGTTCAATGTCGGCA 521 consensus_6048#1 GAGAGTAAAGTTGAG-TCGGAAGGCA-AGGAAGATATACA-GATGAGTTCAATGTCGGCA 529 consensus_6048#2 GAGAGTAAAGTTGAGATCGGAAGGCACAGGAAGATATACACGATGAGTTCAATGTCGGCA 330 *************** ********** ************* ******************* consensus_6048#0 GTGAAATCATCCAGTGAG-GTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTC 580 consensus_6048#1 GTGAAATCATCCAGTGAG-GTTAGTACCTCCGGCCAAGTGGCTCCAGAGCACAACAAGTC 588 consensus_6048#2 GTGAAATCATCCAGTGAGCGTTAGTACCTCCGGCCAAGTGGGTCCAGAGCACAACAAGTC 390 ****************** ********************** ****************** consensus_6048#0 AA-TGACCTGTGAAGA-GAGTGAAATAACACTGGAC-GATGCCGCTCAAGCCACTCCAAA 637 consensus_6048#1 AA-TGACCTGTGAAGA-GATTGAAATAACACTGGAC-GATGCCGCTCAAGCCACTCCAAA 645 consensus_6048#2 ANATGACCTGTGAAGACGAGTGAANTAACACTGGACCGATGCCGCTCAAGCCAATCCAAA 450 * ************* ** **** *********** **************** ****** consensus_6048#0 T-GATAGTCCACTAGACGATACCGCGCAAACAAA-CGCT--AAGAAGAG-CACC-GT-CT 690 consensus_6048#1 T-GATAGTCCACTAGACGATACCGCGCAAACAAA-CGCT--AAGAAGAG-CACC-GT-CT 698 consensus_6048#2 TCGATAGTCCACTAGACGATACCGCGCAAACAAAGCGCTCAAGGAAGAGGCACCCGTGCT 510 * ******************************** **** * ****** **** ** ** consensus_6048#0 CAGCCACAG-------TACAAATAAGCCCAGTT--AAGACTGAA--TGCGAGCAGG--TG 737 consensus_6048#1 CAGCCACAG-------TACAAATAAGCCCAGTT--AAGACTGAA--TGCGAGCAGG--TG 745 consensus_6048#2 CAGNCACAGGTAACAACATTAANGGCGCCAGTTTAAAGACTGANATTGCGAGCCAGCGTG 570 *** ***** * ** ****** ******** ******* * ** consensus_6048#0 GC-GCA-GGTAGACGGTGATAAGAGCACATAAAGAGGTATAGTACATACGCGCGGGAATT 795 consensus_6048#1 GC-GCA-GGTAGACGGTGATA--------------------------------------- 764 consensus_6048#2 GCTGCACGGTAGACGGTGATCAAGA----------------------------------- 595 ** *** ************* consensus_6048#0 ACAGTAGAAAAGAATGCCAGTATACACTTGACGGTAATCTCGTCAGGAACAGTTCAATCG 855 consensus_6048#1 ------------------------------------------------------------ consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 TATTTTAATTTGAAAACGTTTACTAGGGTAAGTTGGTGAGTGTAGAGAGCGGAGTGTGCG 915 consensus_6048#1 ------------------------------------------------------------ consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 AAACGTTTTGCACCAAACCGTCCGCTCAGTGATCGAGCGGACTGCCATATCGCTTACTAC 975 consensus_6048#1 ------------------------------------------------------------ consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 GCTTGGTAAAGTGAGCAAAGATGTCGAATTGGTTGTGCCTTGTGAATGTATTTTAGCTGC 1035 consensus_6048#1 ------------------------------------------------------------ consensus_6048#2 ------------------------------------------------------------ consensus_6048#0 ATTTTACTTTGNTAGCGTTAAGATACATCAATACATAC 1073 consensus_6048#1 -------------------------------------- consensus_6048#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||