cluster # 6049

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Anopheles gambiae
cluster # 6049 cluster # 6049 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6049#0 length = 687 sequences # 3

consensus_6049#1 length = 654 sequences # 1
consensus_6049#2 length = 554 sequences # 1

consensusID : consensus_6049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 687
fasta sequence

                              [CCGCCCACGCGTC--------CGCACCGATCAGTCGCCATCGTTTTGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGGCTCCGGCGTTTTGTATTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGATAAGCAGGTGACAAGCGTA--CGCTCACACAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTACCTTCGCGATTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGTACAGTTTTTACCCAGCTACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCCGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTTGGCAAGCGAAT]

[+] EMBL BM640927             [CCGCCCACGCGTC        CGCACCGATCAGTCGCCATCGTTCTGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGACTCTGGCGTTTTGTGTTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTAAACCGTGCTATTCCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGATAAGCAGGTGACAAGCGCACGCGCTCACACAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTACCTTCGCGATTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGTACAGTTTTTACCCAGCTACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCCGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTTGGCAAGCGAAT]
[+] EMBL BM582438             [CCGCCCACGCGTCCGTTCCATCGCACCGATCAGTCGCCATCGTTTTGTCGCTGCCGCCGCCGTCGCATCGTGTTACCATTGTGGGTCCGGCGTTTTGTATTGAGTGCCCAAAGTCGTAGACCTCCAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGATAAGCAGGTGACAAGCGTA  CGCTCACACCAAGCGATCACAC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM600928             [            C        CGCACCGATCAGTCGCCATCGTTTTGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGGCTCCGGCGTTTTGTATTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGATAAGCAGGTGACAAGCGTA  CGCTCACACAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTGCCTTCGCGATTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTACTACCATCACCCAGGGACCAACGGAGGTACAGAAGCAGCAGAGTCCGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTC                                                                                   ]




>consensus_6049#0
CCGCCCACGCGTCCGCACCGATCAGTCGCCATCGTTTTGTCGCTGCCGCCGCCGTCGCAT
CGTGTTAGCATTGTGGCTCCGGCGTTTTGTATTGAGTGCCCAAAGTCGTAGACCTCGAGC
AGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTA
AACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGATAAG
CAGGTGACAAGCGTACGCTCACACAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGG
ATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTACCTTCGCGATTTTACCCTTGCC
AATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGTACAGT
TTTTACCCAGCTACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCCG
CCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGG
CGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTT
GCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTT
CTTTCGTTTTGTTGTTGGCAAGCGAAT

consensusID : consensus_6049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [AGTGCCCAAAGTCGTAGACCTCGAGCAGCTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACGGTGGATCAAATACACACTGAAGGCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCTGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTTGGCAAGCGAATTGTATCACGCTTCGGTATCTCGGTGCGTCAGTGTCAATGTCGGTGGCGAATCACGGGAGTACTATTTCTTGTCAAGTGACCAACGCCAACAGCAGCGGGCCTGGGCCCTCGCACATCCCCGTGCCGCATCAGTCACGGCTTCGAACGTGACACAGCTCGTGAGCGCAATTTTAGCTACGATTGTTTAAATCAAACATTTTGCTTTGGGAAAGGTAGAGC]

[+] EMBL BX609959             [AGTGCCCAAAGTCGTAGACCTCGAGCAGCTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACGGTGGATCAAATACACACTGAAGGCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCTGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTTGGCAAGCGAATTGTATCACGCTTCGGTATCTCGGTGCGTCAGTGTCAATGTCGGTGGCGAATCACGGGAGTACTATTTCTTGTCAAGTGACCAACGCCAACAGCAGCGGGCCTGGGCCCTCGCACATCCCCGTGCCGCATCAGTCACGGCTTCGAACGTGACACAGCTCGTGAGCGCAATTTTAGCTACGATTGTTTAAATCAAACATTTTGCTTTGGGAAAGGTAGAGC]




>consensus_6049#1
AGTGCCCAAAGTCGTAGACCTCGAGCAGCTGAGCGCATGTGACTGAAGTGTTTGTGAGTG
TGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACGGTGGATCAAATA
CACACTGAAGGCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCT
ACTACCATCACCCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCTGCCGATAACAAAA
AACCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACC
GCTCTCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATT
TTTAAAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGT
TGTTGGCAAGCGAATTGTATCACGCTTCGGTATCTCGGTGCGTCAGTGTCAATGTCGGTG
GCGAATCACGGGAGTACTATTTCTTGTCAAGTGACCAACGCCAACAGCAGCGGGCCTGGG
CCCTCGCACATCCCCGTGCCGCATCAGTCACGGCTTCGAACGTGACACAGCTCGTGAGCG
CAATTTTAGCTACGATTGTTTAAATCAAACATTTTGCTTTGGGAAAGGTAGAGC

consensusID : consensus_6049#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [CCGCGGACGCGTGGGGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGACTCTGGCGTTTTGTGTTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACTGAAGGCAAGCAAGATAAGGAGGTGACAAGCGCACGCTCACTCAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTGCCTTCGCGACTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTTCTACCATCACCCATTGGCCAACGAAGGTAGAGAAGCAGCAGAGTTCGCCGATAACAAAAAATCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGA]

[+] EMBL BM657058             [CCGCGGACGCGTGGGGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGACTCTGGCGTTTTGTGTTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACTGAAGGCAAGCAAGATAAGGAGGTGACAAGCGCACGCTCACTCAAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTGCTGGCGTGCGACTGCCTTCGCGACTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATCAAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTTCTACCATCACCCATTGGCCAACGAAGGTAGAGAAGCAGCAGAGTTCGCCGATAACAAAAAATCGCAGGCAAAACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCACGA]




>consensus_6049#2
CCGCGGACGCGTGGGGTCGCTGCCGCCGCCGTCGCATCGTGTTAGCATTGTGACTCTGGC
GTTTTGTGTTGAGTGCCCAAAGTCGTAGACCTCGAGCAGCTTGAGCGCATGTGACTGAAG
TGTTTGTGAGTGTGTGTGTTTTAAGCATTTTATCTAAACCGTGCTATTTCGGCCCGAACA
GTGGATCAAATACACACTGAAGGCAAGCAAGATAAGGAGGTGACAAGCGCACGCTCACTC
AAAGCGATCACACCAAAGGGGAAGCTCGGAAAAAGGATACACGGCGGGCGAGACTGCGTG
CTGGCGTGCGACTGCCTTCGCGACTTTACCCTTGCCAATTAGCGTGCGCGCGGAACGATC
AAATTAGATTGCATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTTCTACCATCACC
CATTGGCCAACGAAGGTAGAGAAGCAGCAGAGTTCGCCGATAACAAAAAATCGCAGGCAA
AACCCGAACCAACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCA
AGTGTCCTGCACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6049#0      CCGCCCACGCGTCCGCACCGATCAGTCGCCATCGTTTTGTCGCTGCCGCCGCCGTCGCAT 60
consensus_6049#2      ----------------------CCGCGGACG-CGTGGGGTCGCTGCCGCCGCCGTCGCAT 37
consensus_6049#1      ------------------------------------------------------------
                                                                                  

consensus_6049#0      CGTGTTAGCATTGTGGCTCCGGCGTTTTGTATTGAGTGCCCAAAGTCGTAGACCTCGAGC 120
consensus_6049#2      CGTGTTAGCATTGTGACTCTGGCGTTTTGTGTTGAGTGCCCAAAGTCGTAGACCTCGAGC 97
consensus_6049#1      ----------------------------------AGTGCCCAAAGTCGTAGACCTCGAGC 26
                                                        **************************

consensus_6049#0      AGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTTTAAGCATTTTATCTA 180
consensus_6049#2      AGCTTGAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTT-AAGCATTTTATCTA 156
consensus_6049#1      AGCT-GAGCGCATGTGACTGAAGTGTTTGTGAGTGTGTGTGTTTT-AAGCATTTTATCTA 84
                      **** **************************************** **************

consensus_6049#0      AACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACCGAAGGCAAGCAAGAT--- 237
consensus_6049#2      AACCGTGCTATTTCGGCCCGAACAGTGGATCAAATACACACTGAAGGCAAGCAAGAT--- 213
consensus_6049#1      AACCGTGCTATTTCGGCCCGAACGGTGGATCAAATACACACTGAAGGCAAATTAGATTGC 144
                      *********************** ***************** ********   ****   

consensus_6049#0      --------AAGCAGGTGACA-AGCGTACGCTCACACAAAGCGATCACACCAAAGG----- 283
consensus_6049#2      --------AAGGAGGTGACA-AGCGCACGCTCACTCAAAGCGATCACACCAAAGG----- 259
consensus_6049#1      ATTTTACAACGGAAGCAGCACAGTTTTTACCCAGCTACTACCATCAC-CCAGCGGCCAAC 203
                              * * * *   ** **      * **   *   * ***** ***  **     

consensus_6049#0      GGAAGCTCGGAAAAAGGATACACGGCGGGCGA-----GACTGCGTGCTGGCGTGCGACTA 338
consensus_6049#2      GGAAGCTCGGAAAAAGGATACACGGCGGGCGA-----GACTGCGTGCTGGCGTGCGACTG 314
consensus_6049#1      GGAGGTACAGAAGCAGCAGAGTCTGCCGATAACAAAAAACCGCAGGCAAAACCCGAACCA 263
                      *** *  * ***  ** * *  * ** *   *      ** **  **         **  

consensus_6049#0      CCTTCGCGATTTTACCC----TTGCCAATTAGCGTGCGC------GCGGAACGATCAA-A 387
consensus_6049#2      CCTTCGCGACTTTACCC----TTGCCAATTAGCGTGCGC------GCGGAACGATCAA-A 363
consensus_6049#1      ACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGCTCTCGAGCCAAGTGTCCTGCA 323
                       **   *    * * *      ** *  ** *    ***      **  *  *  *   *

consensus_6049#0      TTAGATTGCATTTTA----CAACGGAAGCAGTACAGTTTTTACCCAGCTACTACCATCAC 443
consensus_6049#2      TTAGATTGCATTTTA----CAACGGAAGCAGCACAGTTTTTACCCAGCTTCTACCATCAC 419
consensus_6049#1      CGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTAAAGTGGTTGTGTTCGTTAT 383
                        **  *  *****     * **     * * *** **** *    * *     * * * 

consensus_6049#0      CCAGCGGCCAACGGAGGTACAGAAGCAGCAGAGTCCGCCGATAACAAA-AAACCGCAGGC 502
consensus_6049#2      CCATTGGCCAACGAAGGTAGAGAAGCAGCAGAGTTCGCCGATAACAAA-AAATCGCAGGC 478
consensus_6049#1      T-GTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTTGGCAAGCGAATTGTATCA 442
                                *      *               *  *  * *  ***   **  * *   

consensus_6049#0      AAAACCCGAACC--AACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGC----TC 556
consensus_6049#2      AAAACCCGAACC--AACTCGACAGTGTAAACTGGTGCTGGCGCTTCGTTACCGC----TC 532
consensus_6049#1      CGCTTCGGTATCTCGGTGCGTCAGTGTCAA-TGTCGGTGGCGAATCACGGGAGTACTATT 501
                           * * * *      ** ****** ** **  * *****  **      *     * 

consensus_6049#0      TCGAGCCAAGTGTCCTGCACGAGGATCTATTTTGAGCGCTACTTGCTCGGGACATTTTTA 616
consensus_6049#2      TCGAGCCAAGTGTCCTGCACGA-------------------------------------- 554
consensus_6049#1      TCTTGTCAAGTGACCAACGCCAACAGCAGCGGGCCTGGGCCCTCGCACATCCCCGTGCCG 561
                      **  * ****** **  * * *                                      

consensus_6049#0      AAGTGGTTGTGTTCGTTATTGTGTTTAGATTTCTTTCTTATTTTCTTTCGTTTTGTTGTT 676
consensus_6049#2      ------------------------------------------------------------
consensus_6049#1      CATCAGTCACGGCTTCGAACGTGACACAGCTCGTGAGCGCAATTTTAGCTACGATTGTTT 621
                                                                                  

consensus_6049#0      GGCAAGCGAAT---------------------- 687
consensus_6049#2      ---------------------------------
consensus_6049#1      AAATCAAACATTTTGCTTTGGGAAAGGTAGAGC 654