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Anopheles gambiae
cluster # 6052 cluster # 6052       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6052#0 length = 1406 sequences # 4  
consensus_6052#1 length = 439 sequences # 1  

consensusID : consensus_6052#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1406
fasta sequence
                              [CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC-AGGATATGGGAATACTAC-TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT---AAAAAACATATATAAATGCTATC-GGGTAAGACTATTCCT-AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG]

[+] EMBL BM653789             [CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC AGGATATGGGAATACTAC TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGCACACACCGATCCGCATTGTCTGCGGACGATGATTTGGGCGATGGATTAAGTATTAACCAGGCACAGAAGGCGGTTTTTGCAAAACTGAAACGATACTGGc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX624336             [                                                                                                                                                                                                                                                                                                                                                         cagaTATACCTATGATATGGGAATACTACNACGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACAATTCCTTTATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGANTCGCCAACACTCGTTCCTATATNCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGANATANGATATTACACT   NAAAAACATATATAAATGCTATCGGGGTAGGACTATTCCTAAANTGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA285111            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT   AAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCC                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX625289             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATAAAACACTAAAAAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACAGCGGATGTGTGTGAAAATGATTTTCTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAG CCCCCACACGTTTGCAAATGTTCAACATTTCAGGCGCAATACAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG]


>consensus_6052#0 CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAG GCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTC TGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACA TTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATAT TGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATAT TTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCCAGGAT ATGGGAATACTACTCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACA TATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTA GCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTG ATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGT CTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTG CAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGT CTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACTAAAAA ACATATATAAATGCTATCGGGTAAGACTATTCCTAAGTGAAGCAGAATCGAACGGTTCTG AGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCA TTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTT ACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCA CTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAG TGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTT CCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTT AAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTT CTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATT TTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGA CGTTAGATTAAATTGTAACNAAATGG



consensusID : consensus_6052#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence
                              [TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA]

[-] EMBL AGA283820            [TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA]


>consensus_6052#1 TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATT GTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATC ATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAA GCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTT TCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTC GAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTAC TAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCT ATATAAATTTTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6052#0      CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAG 60
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      GCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTC 120
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      TGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACA 180
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      TTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATAT 240
consensus_6052#1      -TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTAT 59
                       * ** ***    **** *         ***    **     *  *** **   ** ***

consensus_6052#0      TGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATAT 300
consensus_6052#1      TGT-CTGCTTGTAAAGAGTTT---ATAAAATCAGTGATTTTTTTAAGTTTAA----GCCC 111
                      *** * *   **  *   ***   *** *  ***    **  **   *****        

consensus_6052#0      TTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCCAGGAT 360
consensus_6052#1      TTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAAC 171
                      *** * ** **  *  *   * **   *    *   *  **  * * * **       * 

consensus_6052#0      ATGGGAATACTACTCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACA 420
consensus_6052#1      A---AAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAG 228
                      *    ***   *    * ***   ****   * **  **   * **    * *** *   

consensus_6052#0      TATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTA 480
consensus_6052#1      AGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATAT 288
                            * *    * ****   ***    * *     * *   *    *  *  * *   

consensus_6052#0      GCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTG 540
consensus_6052#1      TCTGTGTACGTC--GAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTA 346
                       ***   *  *    * ** * *    *  * *    * ** * *  * ****  **** 

consensus_6052#0      ATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGT 600
consensus_6052#1      CCTAAAGTGTGTACTAAAGCT--ATCGTGAATC-TAATCTAGAA----AGGCCATAGCAA 399
                          *   **  ** *   **  ** *  * *    *** *  *       **  *    

consensus_6052#0      CTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTG 660
consensus_6052#1      TGATGAGAATCGAATAAATCTATA---TAAATTTTAAAAAAAA----------------- 439
                          * *    ** *    * **    *** * ****  *                    

consensus_6052#0      CAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGT 720
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      CTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACTAAAAA 780
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      ACATATATAAATGCTATCGGGTAAGACTATTCCTAAGTGAAGCAGAATCGAACGGTTCTG 840
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      AGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCA 900
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      TTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTT 960
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      ACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCA 1020
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      CTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAG 1080
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      TGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTT 1140
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      CCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTT 1200
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      AAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTT 1260
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      CTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATT 1320
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      TTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGA 1380
consensus_6052#1      ------------------------------------------------------------
                                                                                  

consensus_6052#0      CGTTAGATTAAATTGTAACNAAATGG 1406
consensus_6052#1      --------------------------
                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)