These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1406 fasta sequence [CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC-AGGATATGGGAATACTAC-TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT---AAAAAACATATATAAATGCTATC-GGGTAAGACTATTCCT-AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG] [+] EMBL BM653789 [CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC AGGATATGGGAATACTAC TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGCACACACCGATCCGCATTGTCTGCGGACGATGATTTGGGCGATGGATTAAGTATTAACCAGGCACAGAAGGCGGTTTTTGCAAAACTGAAACGATACTGGc ] [+] EMBL BX624336 [ cagaTATACCTATGATATGGGAATACTACNACGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACAATTCCTTTATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGANTCGCCAACACTCGTTCCTATATNCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGANATANGATATTACACT NAAAAACATATATAAATGCTATCGGGGTAGGACTATTCCTAAANTGAAG ] [+] EMBL AGA285111 [ GATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT AAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCC ] [+] EMBL BX625289 [ ATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATAAAACACTAAAAAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACAGCGGATGTGTGTGAAAATGATTTTCTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAG CCCCCACACGTTTGCAAATGTTCAACATTTCAGGCGCAATACAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG] consensusID : consensus_6052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA] [-] EMBL AGA283820 [TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6052#0 CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAG 60 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 GCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTC 120 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACA 180 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATAT 240 consensus_6052#1 -TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTAT 59 * ** *** **** * *** ** * *** ** ** *** consensus_6052#0 TGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATAT 300 consensus_6052#1 TGT-CTGCTTGTAAAGAGTTT---ATAAAATCAGTGATTTTTTTAAGTTTAA----GCCC 111 *** * * ** * *** *** * *** ** ** ***** consensus_6052#0 TTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCCAGGAT 360 consensus_6052#1 TTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAAC 171 *** * ** ** * * * ** * * * ** * * * ** * consensus_6052#0 ATGGGAATACTACTCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACA 420 consensus_6052#1 A---AAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAG 228 * *** * * *** **** * ** ** * ** * *** * consensus_6052#0 TATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTA 480 consensus_6052#1 AGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATAT 288 * * * **** *** * * * * * * * * * consensus_6052#0 GCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTG 540 consensus_6052#1 TCTGTGTACGTC--GAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTA 346 *** * * * ** * * * * * * ** * * * **** **** consensus_6052#0 ATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGT 600 consensus_6052#1 CCTAAAGTGTGTACTAAAGCT--ATCGTGAATC-TAATCTAGAA----AGGCCATAGCAA 399 * ** ** * ** ** * * * *** * * ** * consensus_6052#0 CTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTG 660 consensus_6052#1 TGATGAGAATCGAATAAATCTATA---TAAATTTTAAAAAAAA----------------- 439 * * ** * * ** *** * **** * consensus_6052#0 CAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGT 720 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACTAAAAA 780 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 ACATATATAAATGCTATCGGGTAAGACTATTCCTAAGTGAAGCAGAATCGAACGGTTCTG 840 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 AGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCA 900 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTT 960 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 ACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCA 1020 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAG 1080 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTT 1140 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTT 1200 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 AAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTT 1260 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATT 1320 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 TTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGA 1380 consensus_6052#1 ------------------------------------------------------------ consensus_6052#0 CGTTAGATTAAATTGTAACNAAATGG 1406 consensus_6052#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||